Information for 11-TKGATCCAACTTGRTY (Motif 19)

C A G T A C G T C A T G C T G A G C A T G T A C G A T C C T G A T C G A G A T C A G C T C A G T C T A G C T A G G C A T A G T C
Reverse Opposite:
C T A G C G T A G A T C A G T C G T C A C T G A C A T G A G C T G A C T C A T G A C T G C G T A G A C T G A T C G T A C G C T A
p-value:1e-4
log p-value:-1.057e+01
Information Content per bp:1.596
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif172.7
Percentage of Background Sequences with motif0.39%
Average Position of motif in Targets75.0 +/- 19.9bp
Average Position of motif in Background51.8 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RHOXF1/MA0719.1/Jaspar

Match Rank:1
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TKGATCCAACTTGRTY
ATAATCCC--------
 C A G T A C G T C A T G C T G A G C A T G T A C G A T C C T G A T C G A G A T C A G C T C A G T C T A G C T A G G C A T A G T C
G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TKGATCCAACTTGRTY
-TAATYNRATTAR---
 C A G T A C G T C A T G C T G A G C A T G T A C G A T C C T G A T C G A G A T C A G C T C A G T C T A G C T A G G C A T A G T C
A C G T G C A T C G T A C G T A G A C T A G C T G C A T T C G A T C G A A C G T G A C T C G T A C T A G A C G T A C G T A C G T

PHOX2A/MA0713.1/Jaspar

Match Rank:3
Score:0.52
Offset:1
Orientation:forward strand
Alignment:TKGATCCAACTTGRTY
-TAATTTAATTA----
 C A G T A C G T C A T G C T G A G C A T G T A C G A T C C T G A T C G A G A T C A G C T C A G T C T A G C T A G G C A T A G T C
A C G T G C A T C T G A C T G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A A C G T A C G T A C G T A C G T

Phox2b/MA0681.1/Jaspar

Match Rank:4
Score:0.52
Offset:1
Orientation:forward strand
Alignment:TKGATCCAACTTGRTY
-TAATTTAATTA----
 C A G T A C G T C A T G C T G A G C A T G T A C G A T C C T G A T C G A G A T C A G C T C A G T C T A G C T A G G C A T A G T C
A C G T G C A T C T G A T C G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A A C G T A C G T A C G T A C G T

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:5
Score:0.52
Offset:1
Orientation:forward strand
Alignment:TKGATCCAACTTGRTY
-TAATCHGATTAC---
 C A G T A C G T C A T G C T G A G C A T G T A C G A T C C T G A T C G A G A T C A G C T C A G T C T A G C T A G G C A T A G T C
A C G T G C A T C T G A T G C A G A C T A G T C G T A C T C A G C G T A A G C T A C G T G C T A G T A C A C G T A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:6
Score:0.51
Offset:0
Orientation:forward strand
Alignment:TKGATCCAACTTGRTY
TTAATCCT--------
 C A G T A C G T C A T G C T G A G C A T G T A C G A T C C T G A T C G A G A T C A G C T C A G T C T A G C T A G G C A T A G T C
G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:7
Score:0.51
Offset:0
Orientation:forward strand
Alignment:TKGATCCAACTTGRTY
TTAATCCC--------
 C A G T A C G T C A T G C T G A G C A T G T A C G A T C C T G A T C G A G A T C A G C T C A G T C T A G C T A G G C A T A G T C
G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0126.1_Obox6/Jaspar

Match Rank:8
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--TKGATCCAACTTGRTY
CNATAATCCGNTTNT---
 A C G T A C G T C A G T A C G T C A T G C T G A G C A T G T A C G A T C C T G A T C G A G A T C A G C T C A G T C T A G C T A G G C A T A G T C
T A G C C T G A G C T A C G A T C G T A C G T A A C G T G T A C A G T C A T C G G A C T C G A T G A C T C G A T C A G T A C G T A C G T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:9
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-TKGATCCAACTTGRTY
TTGTATGCAAATTAGA-
 A C G T C A G T A C G T C A T G C T G A G C A T G T A C G A T C C T G A T C G A G A T C A G C T C A G T C T A G C T A G G C A T A G T C
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A A C G T

Dmbx1/MA0883.1/Jaspar

Match Rank:10
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----TKGATCCAACTTGRTY
NNNATTAATCCGNTTNA---
 A C G T A C G T A C G T A C G T C A G T A C G T C A T G C T G A G C A T G T A C G A T C C T G A T C G A G A T C A G C T C A G T C T A G C T A G G C A T A G T C
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A A C G T A C G T A C G T