Information for 10-CAGGCAGACAGACAGV (Motif 14)

A T G C C G T A A C T G C T A G A G T C C G T A A C T G C T G A T G A C C G T A C T A G C T G A A T G C C G T A C T A G T C G A
Reverse Opposite:
A C G T A G T C A C G T A T C G A G C T A G T C A C G T A C T G A G C T A G T C A C G T A C T G A G T C A G T C A C G T A T C G
p-value:1e-5
log p-value:-1.316e+01
Information Content per bp:1.830
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif13.33%
Number of Background Sequences with motif6.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets24.5 +/- 11.5bp
Average Position of motif in Background32.3 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CAGGCAGACAGACAGV
-TGGCAGNCTGCCAG-
 A T G C C G T A A C T G C T A G A G T C C G T A A C T G C T G A T G A C C G T A C T A G C T G A A T G C C G T A C T A G T C G A
A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CAGGCAGACAGACAGV
--AGGTGNCAGACAG-
 A T G C C G T A A C T G C T A G A G T C C G T A A C T G C T G A T G A C C G T A C T A G C T G A A T G C C G T A C T A G T C G A
A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CAGGCAGACAGACAGV
---CCAGACRSVB---
 A T G C C G T A A C T G C T A G A G T C C G T A A C T G C T G A T G A C C G T A C T A G C T G A A T G C C G T A C T A G T C G A
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CAGGCAGACAGACAGV
---CCAGACAG-----
 A T G C C G T A A C T G C T A G A G T C C G T A A C T G C T G A T G A C C G T A C T A G C T G A A T G C C G T A C T A G T C G A
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CAGGCAGACAGACAGV
--AGGTGHCAGACA--
 A T G C C G T A A C T G C T A G A G T C C G T A A C T G C T G A T G A C C G T A C T A G C T G A A T G C C G T A C T A G T C G A
A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CAGGCAGACAGACAGV
TTGGCANNNTGCCAAG
 A T G C C G T A A C T G C T A G A G T C C G T A A C T G C T G A T G A C C G T A C T A G C T G A A T G C C G T A C T A G T C G A
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:7
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CAGGCAGACAGACAGV--
---SCAGYCADGCATGAC
 A T G C C G T A A C T G C T A G A G T C C G T A A C T G C T G A T G A C C G T A C T A G C T G A A T G C C G T A C T A G T C G A A C G T A C G T
A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:CAGGCAGACAGACAGV
-------BCAGACWA-
 A T G C C G T A A C T G C T A G A G T C C G T A A C T G C T G A T G A C C G T A C T A G C T G A A T G C C G T A C T A G T C G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CAGGCAGACAGACAGV
BAGTCATANTGAAAG-
 A T G C C G T A A C T G C T A G A G T C C G T A A C T G C T G A T G A C C G T A C T A G C T G A A T G C C G T A C T A G T C G A
A C T G C G T A A T C G C G A T T G A C C G T A C G A T G C T A G T C A C G A T T C A G C T G A C T G A C T G A T A C G A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CAGGCAGACAGACAGV
-TGGCACCATGCCAA-
 A T G C C G T A A C T G C T A G A G T C C G T A A C T G C T G A T G A C C G T A C T A G C T G A A T G C C G T A C T A G T C G A
A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T