Information for 2-CCTGACCTGAATV (Motif 4)

A G T C A G T C A C G T A C T G C G T A A G T C G T A C C G A T A C T G C G T A T C G A A C G T T C G A
Reverse Opposite:
A C G T G T C A A G C T C G A T G T A C C G T A A C T G A C T G A C G T A G T C C G T A C T A G A C T G
p-value:1e-7
log p-value:-1.648e+01
Information Content per bp:1.774
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif72.5
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets38.8 +/- 19.7bp
Average Position of motif in Background45.4 +/- 41.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA/MA0071.1/Jaspar

Match Rank:1
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:CCTGACCTGAATV
--TGACCTTGAT-
 A G T C A G T C A C G T A C T G C G T A A G T C G T A C C G A T A C T G C G T A T C G A A C G T T C G A
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:CCTGACCTGAATV
--TGACCTYA---
 A G T C A G T C A C G T A C T G C G T A A G T C G T A C C G A T A C T G C G T A T C G A A C G T T C G A
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:CCTGACCTGAATV
--TGACCT-----
 A G T C A G T C A C G T A C T G C G T A A G T C G T A C C G A T A C T G C G T A T C G A A C G T T C G A
A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CCTGACCTGAATV
CNNTTGACCTTTG--
 A C G T A C G T A G T C A G T C A C G T A C T G C G T A A G T C G T A C C G A T A C T G C G T A T C G A A C G T T C G A
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:5
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----CCTGACCTGAATV
TGACCTTGACCT-----
 A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C T G C G T A A G T C G T A C C G A T A C T G C G T A T C G A A C G T T C G A
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CCTGACCTGAATV
-GTGACCTT----
 A G T C A G T C A C G T A C T G C G T A A G T C G T A C C G A T A C T G C G T A T C G A A C G T T C G A
A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CCTGACCTGAATV-
NNNNTGACCTTTNNNN
 A C G T A C G T A G T C A G T C A C G T A C T G C G T A A G T C G T A C C G A T A C T G C G T A T C G A A C G T T C G A A C G T
A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CCTGACCTGAATV
--TGACCYCT---
 A G T C A G T C A C G T A C T G C G T A A G T C G T A C C G A T A C T G C G T A T C G A A C G T T C G A
A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CCTGACCTGAATV
-NTGACCTTGA--
 A G T C A G T C A C G T A C T G C G T A A G T C G T A C C G A T A C T G C G T A T C G A A C G T T C G A
A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:10
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CCTGACCTGAATV
TGACCTTGACCT-----
 A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C T G C G T A A G T C G T A C C G A T A C T G C G T A T C G A A C G T T C G A
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T A C G T A C G T A C G T