Information for 20-AGGCTTAGAC (Motif 38)

C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C A C G T C G T A C G T A A C T G A G T C A G T C A C G T
p-value:1e-3
log p-value:-7.439e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.0 +/- 0.0bp
Average Position of motif in Background31.9 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Crx/MA0467.1/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---AGGCTTAGAC
AAGAGGATTAG--
 A C G T A C G T A C G T C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C T G C G T A A G T C
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:2
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AGGCTTAGAC
-GGATTAGC-
 C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C T G C G T A A G T C
A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGGCTTAGAC
AGGCCTNG--
 C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C T G C G T A A G T C
C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AGGCTTAGAC
NGGGATTA---
 A C G T C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C T G C G T A A G T C
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGGCTTAGAC
AGGCCTAG--
 C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C T G C G T A A G T C
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AGGCTTAGAC
VRGGATTARN-
 A C G T C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C T G C G T A A G T C
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T

PITX3/MA0714.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGGCTTAGAC
GGGATTANN-
 C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C T G C G T A A G T C
C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGGCTTAGAC
GGGATTAA--
 C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C T G C G T A A G T C
C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGGCTTAGAC
NGGATTAA--
 C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C T G C G T A A G T C
T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGGCTTAGAC
NGGATTAN--
 C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C T G C G T A A G T C
C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T A C G T