Information for 6-ATGCTTAATG (Motif 13)

C T G A A C G T A C T G A T G C A C G T A C G T C T G A G T C A A C G T A T C G
Reverse Opposite:
A T G C C G T A C A G T A G C T T G C A T G C A T A C G A G T C C G T A A G C T
p-value:1e-11
log p-value:-2.541e+01
Information Content per bp:1.832
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.79%
Number of Background Sequences with motif81.5
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets52.8 +/- 22.3bp
Average Position of motif in Background52.3 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:1
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:ATGCTTAATG-
-TGATTGATGA
 C T G A A C G T A C T G A T G C A C G T A C G T C T G A G T C A A C G T A T C G A C G T
A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:ATGCTTAATG---
-TGATTRATGGCY
 C T G A A C G T A C T G A T G C A C G T A C G T C T G A G T C A A C G T A T C G A C G T A C G T A C G T
A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

PH0148.1_Pou3f3/Jaspar

Match Rank:3
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----ATGCTTAATG--
AAAATATGCATAATAAA
 A C G T A C G T A C G T A C G T A C G T C T G A A C G T A C T G A T G C A C G T A C G T C T G A G T C A A C G T A T C G A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:ATGCTTAATG
ATGAATATTC
 C T G A A C G T A C T G A T G C A C G T A C G T C T G A G T C A A C G T A T C G
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:ATGCTTAATG--
ATGATKGATGRC
 C T G A A C G T A C T G A T G C A C G T A C G T C T G A G T C A A C G T A T C G A C G T A C G T
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:6
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--ATGCTTAATG---
WYATGCATWATGCAT
 A C G T A C G T C T G A A C G T A C T G A T G C A C G T A C G T C T G A G T C A A C G T A T C G A C G T A C G T A C G T
C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:7
Score:0.66
Offset:3
Orientation:forward strand
Alignment:ATGCTTAATG-
---GKTAATGR
 C T G A A C G T A C T G A T G C A C G T A C G T C T G A G T C A A C G T A T C G A C G T
A C G T A C G T A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:ATGCTTAATG--
ATGCATAATTCA
 C T G A A C G T A C T G A T G C A C G T A C G T C T G A G T C A A C G T A T C G A C G T A C G T
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

NKX6-2/MA0675.1/Jaspar

Match Rank:9
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:ATGCTTAATG--
----TTAATTAN
 C T G A A C G T A C T G A T G C A C G T A C G T C T G A G T C A A C G T A T C G A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G

Hoxa9/MA0594.1/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:ATGCTTAATG--
-TGATTTATGGC
 C T G A A C G T A C T G A T G C A C G T A C G T C T G A G T C A A C G T A T C G A C G T A C G T
A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C