Information for 1-GTCAAGGWAACCA (Motif 1)

A C T G A G C T A G T C C G T A C G T A C T A G A T C G C G A T C G T A C G T A A T G C A G T C G T C A
Reverse Opposite:
A C G T A C T G A T C G A C G T A C G T C G T A A T G C A G T C A C G T A C G T A C T G T C G A A G T C
p-value:1e-14
log p-value:-3.336e+01
Information Content per bp:1.859
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets67.8 +/- 18.0bp
Average Position of motif in Background37.4 +/- 13.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GTCAAGGWAACCA--
TGCCAAAATAAACANN
 A C G T A C T G A G C T A G T C C G T A C G T A C T A G A T C G C G A T C G T A C G T A A T G C A G T C G T C A A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GTCAAGGWAACCA
BTCAAGGTCA---
 A C T G A G C T A G T C C G T A C G T A C T A G A T C G C G A T C G T A C G T A A T G C A G T C G T C A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GTCAAGGWAACCA
AGGTCAAGGTCA---
 A C G T A C G T A C T G A G C T A G T C C G T A C G T A C T A G A T C G C G A T C G T A C G T A A T G C A G T C G T C A
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GTCAAGGWAACCA
AGGTCAAGGTCA---
 A C G T A C G T A C T G A G C T A G T C C G T A C G T A C T A G A T C G C G A T C G T A C G T A A T G C A G T C G T C A
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GTCAAGGWAACCA
AAGTTCAAGGTCAGC-
 A C G T A C G T A C G T A C T G A G C T A G T C C G T A C G T A C T A G A T C G C G A T C G T A C G T A A T G C A G T C G T C A
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GTCAAGGWAACCA
NTCAAGGTCA---
 A C T G A G C T A G T C C G T A C G T A C T A G A T C G C G A T C G T A C G T A A T G C A G T C G T C A
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T

FOXF2/MA0030.1/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GTCAAGGWAACCA--
-CAAACGTAAACAAT
 A C T G A G C T A G T C C G T A C G T A C T A G A T C G C G A T C G T A C G T A A T G C A G T C G T C A A C G T A C G T
A C G T A G T C G T C A G C T A C G T A T A G C C T A G A C G T C G T A C G T A C G T A A G T C C G T A G C T A C G A T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GTCAAGGWAACCA
NAGGTCACNNTGACC-
 A C G T A C G T A C G T A C T G A G C T A G T C C G T A C G T A C T A G A T C G C G A T C G T A C G T A A T G C A G T C G T C A
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GTCAAGGWAACCA
-TCAAGGTCAN--
 A C T G A G C T A G T C C G T A C G T A C T A G A T C G C G A T C G T A C G T A A T G C A G T C G T C A
A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T

ESR1/MA0112.3/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GTCAAGGWAACCA-
AAGGTCACGGTGACCTG
 A C G T A C G T A C G T A C T G A G C T A G T C C G T A C G T A C T A G A T C G C G A T C G T A C G T A A T G C A G T C G T C A A C G T
C T G A T C G A A C T G C T A G A C G T G A T C C T G A T G A C T A C G T C A G A G C T C T A G T C G A A T G C G T A C A G C T A C T G