Information for 2-TGTATGGCCC (Motif 7)

A C G T A C T G A C G T C G T A A C G T A C T G A C T G A G T C A T G C A G T C
Reverse Opposite:
A C T G A T C G A C T G A G T C A G T C C G T A A C G T G T C A A G T C C G T A
p-value:1e-4
log p-value:-1.049e+01
Information Content per bp:1.951
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif4.35%
Number of Background Sequences with motif7.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets42.2 +/- 23.7bp
Average Position of motif in Background39.8 +/- 12.9bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TGTATGGCCC
TTTTATGGCTN
 A C G T A C G T A C T G A C G T C G T A A C G T A C T G A C T G A G T C A T G C A G T C
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

PH0013.1_Cdx2/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TGTATGGCCC--
NAATTTTATTACCNNN
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T C G T A A C G T A C T G A C T G A G T C A T G C A G T C A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TGTATGGCCC
TGATTTATGGCC-
 A C G T A C G T A C G T A C G T A C T G A C G T C G T A A C G T A C T G A C T G A G T C A T G C A G T C
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:4
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TGTATGGCCC-
NGANTTTTATGGCTCN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T C G T A A C G T A C T G A C T G A G T C A T G C A G T C A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TGTATGGCCC
NTTTTATGAC--
 A C G T A C G T A C G T A C T G A C G T C G T A A C G T A C T G A C T G A G T C A T G C A G T C
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:6
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------TGTATGGCCC-
ANTAATTTTATGGCCGN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T C G T A A C G T A C T G A C T G A G T C A T G C A G T C A C G T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TGTATGGCCC
CGTGGGTGGTCC
 A C G T A C G T A C G T A C T G A C G T C G T A A C G T A C T G A C T G A G T C A T G C A G T C
A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGTATGGCCC--
TGTCTGDCACCT
 A C G T A C T G A C G T C G T A A C G T A C T G A C T G A G T C A T G C A G T C A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:9
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TGTATGGCCC
TGATTTATGGCC-
 A C G T A C G T A C G T A C G T A C T G A C G T C G T A A C G T A C T G A C T G A G T C A T G C A G T C
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C A C G T

CDX1/MA0878.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TGTATGGCCC
TTTTATTGC--
 A C G T A C G T A C T G A C G T C G T A A C G T A C T G A C T G A G T C A T G C A G T C
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T