Information for 7-GCAGGCAGGCAGG (Motif 12)

A T C G A G T C G T C A C T A G A T C G A T G C C G T A C T A G A T C G G T A C C G T A C T A G C T A G
Reverse Opposite:
A G T C A G T C A C G T A C T G A T G C A G T C A C G T A T C G A T G C A G T C A C G T A C T G A T G C
p-value:1e-5
log p-value:-1.304e+01
Information Content per bp:1.817
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif3.85%
Number of Background Sequences with motif37.6
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets71.0 +/- 21.4bp
Average Position of motif in Background48.5 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:GCAGGCAGGCAGG--
SCAGYCADGCATGAC
 A T C G A G T C G T C A C T A G A T C G A T G C C G T A C T A G A T C G G T A C C G T A C T A G C T A G A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GCAGGCAGGCAGG---
GCAGCCAAGCGTGACN
 A T C G A G T C G T C A C T A G A T C G A T G C C G T A C T A G A T C G G T A C C G T A C T A G C T A G A C G T A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.62
Offset:5
Orientation:forward strand
Alignment:GCAGGCAGGCAGG---
-----AAGGCAAGTGT
 A T C G A G T C G T C A C T A G A T C G A T G C C G T A C T A G A T C G G T A C C G T A C T A G C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCAGGCAGGCAGG
TGGCAGNCTGCCAG-
 A C G T A C G T A T C G A G T C G T C A C T A G A T C G A T G C C G T A C T A G A T C G G T A C C G T A C T A G C T A G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T

PAX5/MA0014.2/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCAGGCAGGCAGG--
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C G T A C G T A T C G A G T C G T C A C T A G A T C G A T G C C G T A C T A G A T C G G T A C C G T A C T A G C T A G A C G T A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCAGGCAGGCAGG----
GGAAGGAAGGAAGGAAGG
 A C G T A T C G A G T C G T C A C T A G A T C G A T G C C G T A C T A G A T C G G T A C C G T A C T A G C T A G A C G T A C G T A C G T A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GCAGGCAGGCAGG
TBGCACGCAA-----
 A C G T A C G T A T C G A G T C G T C A C T A G A T C G A T G C C G T A C T A G A T C G G T A C C G T A C T A G C T A G
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---GCAGGCAGGCAGG
TTGGCANNNTGCCAAG
 A C G T A C G T A C G T A T C G A G T C G T C A C T A G A T C G A T G C C G T A C T A G A T C G G T A C C G T A C T A G C T A G
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GCAGGCAGGCAGG
CCAGACAG-----
 A T C G A G T C G T C A C T A G A T C G A T G C C G T A C T A G A T C G G T A C C G T A C T A G C T A G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GCAGGCAGGCAGG
CCAGACRSVB---
 A T C G A G T C G T C A C T A G A T C G A T G C C G T A C T A G A T C G G T A C C G T A C T A G C T A G
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T