Information for 6-GACCTARGTAGTT (Motif 10)

A T C G C T G A A G T C A G T C C G A T C T G A C T A G A T C G A C G T C G T A A C T G A C G T C A G T
Reverse Opposite:
G C T A G T C A G T A C G C A T C G T A A T G C G A T C A G C T C G T A C T A G A C T G A G C T A T G C
p-value:1e-5
log p-value:-1.374e+01
Information Content per bp:1.722
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif3.85%
Number of Background Sequences with motif31.1
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets46.0 +/- 22.3bp
Average Position of motif in Background46.0 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GACCTARGTAGTT
TTGACCTANTTATN-
 A C G T A C G T A T C G C T G A A G T C A G T C C G A T C T G A C T A G A T C G A C G T C G T A A C T G A C G T C A G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GACCTARGTAGTT
TGACCTARTT----
 A C G T A T C G C T G A A G T C A G T C C G A T C T G A C T A G A T C G A C G T C G T A A C T G A C G T C A G T
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GACCTARGTAGTT
TGACCTTGAT----
 A C G T A T C G C T G A A G T C A G T C C G A T C T G A C T A G A T C G A C G T C G T A A C T G A C G T C A G T
A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GACCTARGTAGTT
TGACCT--------
 A C G T A T C G C T G A A G T C A G T C C G A T C T G A C T A G A T C G A C G T C G T A A C T G A C G T C A G T
A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GACCTARGTAGTT
TGACCTYA------
 A C G T A T C G C T G A A G T C A G T C C G A T C T G A C T A G A T C G A C G T C G T A A C T G A C G T C A G T
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GACCTARGTAGTT
AGGCCTAG------
 A C G T A T C G C T G A A G T C A G T C C G A T C T G A C T A G A T C G A C G T C G T A A C T G A C G T C A G T
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GACCTARGTAGTT
AGGCCTNG------
 A C G T A T C G C T G A A G T C A G T C C G A T C T G A C T A G A T C G A C G T C G T A A C T G A C G T C A G T
C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GACCTARGTAGTT
CTGACCTTTG-----
 A C G T A C G T A T C G C T G A A G T C A G T C C G A T C T G A C T A G A T C G A C G T C G T A A C T G A C G T C A G T
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GACCTARGTAGTT
NTGACCTTGA-----
 A C G T A C G T A T C G C T G A A G T C A G T C C G A T C T G A C T A G A T C G A C G T C G T A A C T G A C G T C A G T
C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T A C G T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----GACCTARGTAGTT
CNNTTGACCTTTG-----
 A C G T A C G T A C G T A C G T A C G T A T C G C T G A A G T C A G T C C G A T C T G A C T A G A T C G A C G T C G T A A C T G A C G T C A G T
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G A C G T A C G T A C G T A C G T A C G T