Information for 6-GCACCCTTGA (Motif 27)

A C T G A T G C C G T A A G T C A G T C A G T C C G A T A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A C G T A A C T G A C T G A C T G A C G T A T C G A G T C
p-value:1e-6
log p-value:-1.485e+01
Information Content per bp:1.940
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif16.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets53.5 +/- 21.3bp
Average Position of motif in Background54.3 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-8/MA0673.1/Jaspar

Match Rank:1
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GCACCCTTGA-
--CCACTTGAA
 A C T G A T G C C G T A A G T C A G T C A G T C C G A T A C G T A C T G C G T A A C G T
A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCACCCTTGA---
-TGACCTTGACCT
 A C T G A T G C C G T A A G T C A G T C A G T C C G A T A C G T A C T G C G T A A C G T A C G T A C G T
A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:3
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GCACCCTTGA---
---CCTTTGAWGT
 A C T G A T G C C G T A A G T C A G T C A G T C C G A T A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GCACCCTTGA---
---CCTTTGATGT
 A C T G A T G C C G T A A G T C A G T C A G T C C G A T A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

Nr2f6/MA0677.1/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCACCCTTGA----
TGACCTTTGACCTN
 A C T G A T G C C G T A A G T C A G T C A G T C C G A T A C G T A C T G C G T A A C G T A C G T A C G T A C G T
A G C T T C A G T G C A G T A C G T A C A G C T G A C T G A C T T C A G T G C A G T A C G T A C A G C T A G T C

Mitf/MA0620.1/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GCACCCTTGA--
--NCACGTGACN
 A C T G A T G C C G T A A G T C A G T C A G T C C G A T A C G T A C T G C G T A A C G T A C G T
A C G T A C G T A G T C G T A C C G T A A G T C T C A G C A G T A C T G T G C A A G T C G A T C

PB0137.1_Irf3_2/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCACCCTTGA--
NNGCACCTTTCTCC
 A C G T A C G T A C T G A T G C C G T A A G T C A G T C A G T C C G A T A C G T A C T G C G T A A C G T A C G T
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C

RXRG/MA0856.1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCACCCTTGA----
TGACCTTTGACCCC
 A C T G A T G C C G T A A G T C A G T C A G T C C G A T A C G T A C T G C G T A A C G T A C G T A C G T A C G T
A G C T T C A G T G C A G T A C G T A C G A C T G A C T G A C T T C A G T G C A G T A C G T A C A G T C A G T C

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GCACCCTTGA-
-TGACCTTGAN
 A C T G A T G C C G T A A G T C A G T C A G T C C G A T A C G T A C T G C G T A A C G T
A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GCACCCTTGA---
-TGACCTTGACCT
 A C T G A T G C C G T A A G T C A G T C A G T C C G A T A C G T A C T G C G T A A C G T A C G T A C G T
A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T