Information for 1-CTYTCCTTCACCMWCT (Motif 1)

A G T C A C G T A G C T A G C T A G T C A G T C A G C T G C A T A G T C C G T A G A T C A G T C G T C A C G T A G T A C A G C T
Reverse Opposite:
C T G A A C T G C G A T A C G T A C T G C A T G A C G T A C T G C G T A C T G A C T A G A C T G C T G A C T G A C G T A C T A G
p-value:1e-12
log p-value:-2.848e+01
Information Content per bp:1.757
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif10.64%
Number of Background Sequences with motif9.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets44.2 +/- 19.0bp
Average Position of motif in Background51.6 +/- 20.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CTYTCCTTCACCMWCT
-TGACCTTGACCT---
 A G T C A C G T A G C T A G C T A G T C A G T C A G C T G C A T A G T C C G T A G A T C A G T C G T C A C G T A G T A C A G C T
A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CTYTCCTTCACCMWCT
-TGACCTTGACCT---
 A G T C A C G T A G C T A G C T A G T C A G T C A G C T G C A T A G T C C G T A G A T C A G T C G T C A C G T A G T A C A G C T
A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CTYTCCTTCACCMWCT
CTGTCTGTCACCT---
 A G T C A C G T A G C T A G C T A G T C A G T C A G C T G C A T A G T C C G T A G A T C A G T C G T C A C G T A G T A C A G C T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CTYTCCTTCACCMWCT-------
---GCCTCCTCCMTCWGACTGKS
 A G T C A C G T A G C T A G C T A G T C A G T C A G C T G C A T A G T C C G T A G A T C A G T C G T C A C G T A G T A C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G G A T C G A T C G A C T A G T C A G T C G C A T A G T C A G T C G T A C A G C T A G T C G C T A T C A G C T G A A G T C G A C T T A C G A C T G T A G C

Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer

Match Rank:5
Score:0.51
Offset:3
Orientation:forward strand
Alignment:CTYTCCTTCACCMWCT
---CCCCTCCCCCAC-
 A G T C A C G T A G C T A G C T A G T C A G T C A G C T G C A T A G T C C G T A G A T C A G T C G T C A C G T A G T A C A G C T
A C G T A C G T A C G T T A G C G T A C A G T C G T A C C G A T A G T C A G T C A G T C A G T C A G T C C G T A G A T C A C G T

RARA::RXRA/MA0159.1/Jaspar

Match Rank:6
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----CTYTCCTTCACCMWCT
TGACCTCTCNNTGACCT---
 A C G T A C G T A C G T A C G T A G T C A C G T A G C T A G C T A G T C A G T C A G C T G C A T A G T C C G T A G A T C A G T C G T C A C G T A G T A C A G C T
G A C T T A C G G T C A T G A C A G T C A C G T A T G C G A C T A G T C A T G C T C A G A G C T T A C G G T C A G T A C A G T C A G C T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-CTYTCCTTCACCMWCT
NCTGTCAATCAN-----
 A C G T A G T C A C G T A G C T A G C T A G T C A G T C A G C T G C A T A G T C C G T A G A T C A G T C G T C A C G T A G T A C A G C T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--CTYTCCTTCACCMWCT
GSCTGTCACTCA------
 A C G T A C G T A G T C A C G T A G C T A G C T A G T C A G T C A G C T G C A T A G T C C G T A G A T C A G T C G T C A C G T A G T A C A G C T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T A C G T A C G T A C G T

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:CTYTCCTTCACCMWCT
-KGCCCTTCCCCA---
 A G T C A C G T A G C T A G C T A G T C A G T C A G C T G C A T A G T C C G T A G A T C A G T C G T C A C G T A G T A C A G C T
A C G T C A G T C A T G G A T C G A T C G A T C G A C T A G C T T G A C G A T C G A T C G A T C C T G A A C G T A C G T A C G T

ZNF263/MA0528.1/Jaspar

Match Rank:10
Score:0.50
Offset:-5
Orientation:reverse strand
Alignment:-----CTYTCCTTCACCMWCT
TCCTCCTCCCCCTCCTCCTCC
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G C T A G C T A G T C A G T C A G C T G C A T A G T C C G T A G A T C A G T C G T C A C G T A G T A C A G C T
G A C T G A T C G A T C G A C T G A T C G A T C G A C T A G T C G A T C G A T C G A T C A G T C A G C T A G T C G T A C C G A T A T G C G T A C G A C T A G T C G A T C