Information for 1-TTTCTTGAGTGGC (Motif 7)

A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G T A A C T G A C G T A C T G C T A G A T G C
Reverse Opposite:
A T C G A G T C A G T C G T C A A G T C A C G T A G T C C G T A C G T A A C T G C G T A G T C A G T C A
p-value:1e-9
log p-value:-2.231e+01
Information Content per bp:1.934
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.0 +/- 15.6bp
Average Position of motif in Background44.7 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.79
Offset:3
Orientation:reverse strand
Alignment:TTTCTTGAGTGGC-
---CTTGAGTGGCT
 A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G T A A C T G A C G T A C T G C T A G A T G C A C G T
A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:2
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:TTTCTTGAGTGGC
---CTYRAGTGSY
 A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G T A A C T G A C G T A C T G C T A G A T G C
A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:3
Score:0.70
Offset:3
Orientation:forward strand
Alignment:TTTCTTGAGTGGC
---BTBRAGTGSN
 A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G T A A C T G A C G T A C T G C T A G A T G C
A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:TTTCTTGAGTGGC-
----TTGAGTGSTT
 A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G T A A C T G A C G T A C T G C T A G A T G C A C G T
A C G T A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TTTCTTGAGTGGC----
NTNNTTAAGTGGNTNAN
 A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G T A A C T G A C G T A C T G C T A G A T G C A C G T A C G T A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.65
Offset:4
Orientation:forward strand
Alignment:TTTCTTGAGTGGC-
----TTRAGTGSYK
 A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G T A A C T G A C G T A C T G C T A G A T G C A C G T
A C G T A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:TTTCTTGAGTGGC---
----BTGABTGACAGS
 A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G T A A C T G A C G T A C T G C T A G A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

PH0111.1_Nkx2-2/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TTTCTTGAGTGGC---
NANTTTCAAGTGGTTAN
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G T A A C T G A C G T A C T G C T A G A T G C A C G T A C G T A C G T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

PH0004.1_Nkx3-2/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TTTCTTGAGTGGC----
NTNNTTAAGTGGTTANN
 A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G T A A C T G A C G T A C T G C T A G A T G C A C G T A C G T A C G T A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

Nkx3-1/MA0124.2/Jaspar

Match Rank:10
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:TTTCTTGAGTGGC
----TTAAGTGGT
 A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G T A A C T G A C G T A C T G C T A G A T G C
A C G T A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T