Information for 3-GCCTATCGAA (Motif 6)

A C T G A G T C A T G C A C G T C T G A A C G T G T A C A C T G C G T A C G T A
Reverse Opposite:
A C G T C G A T A G T C A C T G G T C A A G C T C G T A A T C G A C T G A G T C
p-value:1e-10
log p-value:-2.323e+01
Information Content per bp:1.879
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.22%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.0 +/- 22.9bp
Average Position of motif in Background29.1 +/- 7.3bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0034.1_Irf4_1/Jaspar

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCCTATCGAA------
-CGTATCGAAACCAAA
 A C T G A G T C A T G C A C G T C T G A A C G T G T A C A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T G A C C T A G C G A T C G T A G A C T A G T C C T A G T C G A C G T A C G T A T A G C G A T C C T G A G T C A C G T A

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCCTATCGAA
AGGCCTAG----
 A C G T A C G T A C T G A G T C A T G C A C G T C T G A A C G T G T A C A C T G C G T A C G T A
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T

PB0105.1_Arid3a_2/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCCTATCGAA---
ACCCGTATCAAATTT
 A C G T A C G T A C T G A G T C A T G C A C G T C T G A A C G T G T A C A C T G C G T A C G T A A C G T A C G T A C G T
G T C A G T A C T G A C T A G C T C A G A G C T T C G A A G C T T A G C C T G A C G T A T C G A C G A T G A C T C A G T

NFY(CCAAT)/Promoter/Homer

Match Rank:4
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GCCTATCGAA
AGCCAATCGG-
 A C G T A C T G A G T C A T G C A C G T C T G A A C G T G T A C A C T G C G T A C G T A
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----GCCTATCGAA
CNAGGCCT------
 A C G T A C G T A C G T A C G T A C T G A G T C A T G C A C G T C T G A A C G T G T A C A C T G C G T A C G T A
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:6
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GCCTATCGAA--
--NTATYGATCH
 A C T G A G T C A T G C A C G T C T G A A C G T G T A C A C T G C G T A C G T A A C G T A C G T
A C G T A C G T C T A G C A G T C G T A A C G T A G T C A C T G C G T A A G C T A G T C G A T C

CUX2/MA0755.1/Jaspar

Match Rank:7
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GCCTATCGAA--
--TTATCGATTA
 A C T G A G T C A T G C A C G T C T G A A C G T G T A C A C T G C G T A C G T A A C G T A C G T
A C G T A C G T C G A T C G A T C G T A G C A T G A T C T C A G T C G A G A C T G A C T C G T A

CUX1/MA0754.1/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GCCTATCGAA--
--NTATCGATTA
 A C T G A G T C A T G C A C G T C T G A A C G T G T A C A C T G C G T A C G T A A C G T A C G T
A C G T A C G T C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A

Zfx/MA0146.2/Jaspar

Match Rank:9
Score:0.51
Offset:-9
Orientation:forward strand
Alignment:---------GCCTATCGAA
GGGGCCGAGGCCTG-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A T G C A C G T C T G A A C G T G T A C A C T G C G T A C G T A
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T A C G T A C G T A C G T

PB0035.1_Irf5_1/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GCCTATCGAA-----
ATAAACCGAAACCAA
 A C T G A G T C A T G C A C G T C T G A A C G T G T A C A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C G T A C G A T C T G A C G T A C T G A G A T C G A T C C T A G C T G A C G T A C G T A T A G C G A T C C T G A T C G A