Information for 2-GACCTSAYTAGTT (Motif 8)

A C T G C T G A A G T C A G T C A C G T A T C G G T C A G A T C A C G T C T G A A C T G A G C T C G A T
Reverse Opposite:
C G T A C T G A A G T C A G C T G T C A C T A G A C G T T A G C C G T A A C T G T A C G A G C T A G T C
p-value:1e-10
log p-value:-2.329e+01
Information Content per bp:1.755
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif2.35%
Number of Background Sequences with motif12.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets46.8 +/- 22.0bp
Average Position of motif in Background37.4 +/- 17.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0058.1_Hoxb3/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GACCTSAYTAGTT---
TGAGCTAATTAGTTGGA
 A C G T A C T G C T G A A G T C A G T C A C G T A T C G G T C A G A T C A C G T C T G A A C T G A G C T C G A T A C G T A C G T A C G T
C G A T T C A G T G C A T A C G A T G C G A C T G T C A C G T A C G A T A C G T C T G A T A C G A G C T C A G T T C A G C T A G C G T A

PH0092.1_Lhx2/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GACCTSAYTAGTT--
NNNNNCTAATTAGTTTA
 A C G T A C G T A C T G C T G A A G T C A G T C A C G T A T C G G T C A G A T C A C G T C T G A A C T G A G C T C G A T A C G T A C G T
A T C G C A G T A C G T G T A C T C G A G A T C G A C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C A G T A C G T G C T A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GACCTSAYTAGTT
TGACCTYA------
 A C G T A C T G C T G A A G T C A G T C A C G T A T C G G T C A G A T C A C G T C T G A A C T G A G C T C G A T
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PH0028.1_En1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GACCTSAYTAGTT---
GNATTAATTAGTTNNC
 A C T G C T G A A G T C A G T C A C G T A T C G G T C A G A T C A C G T C T G A A C T G A G C T C G A T A C G T A C G T A C G T
A C T G G A T C T G C A G A C T G A C T C G T A C G T A A G C T A G C T C T G A C T A G A C G T A C G T A G T C A T C G A G T C

PH0027.1_Emx2/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GACCTSAYTAGTT---
ACCACTAATTAGTGGAC
 A C G T A C T G C T G A A G T C A G T C A C G T A T C G G T C A G A T C A C G T C T G A A C T G A G C T C G A T A C G T A C G T A C G T
G C T A T A G C T G A C T C G A A G T C G A C T G T C A G C T A C A G T A C G T C T G A T C A G A G C T A C T G T A C G G C T A A G T C

PH0031.1_Evx1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GACCTSAYTAGTT---
AGAACTAATTAGTGGAC
 A C G T A C T G C T G A A G T C A G T C A C G T A T C G G T C A G A T C A C G T C T G A A C T G A G C T C G A T A C G T A C G T A C G T
G C T A T C A G G C T A T C G A A T G C G A C T G T C A G T C A A C G T A C G T C T G A T A C G A G C T A T C G T A C G C G T A T A G C

POU6F2/MA0793.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GACCTSAYTAGTT
-AGCTCATTAT--
 A C T G C T G A A G T C A G T C A C G T A T C G G T C A G A T C A C G T C T G A A C T G A G C T C G A T
A C G T C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T A C G T A C G T

PH0152.1_Pou6f1_2/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GACCTSAYTAGTT--
GCAACCTCATTATNNNN
 A C G T A C G T A C T G C T G A A G T C A G T C A C G T A T C G G T C A G A T C A C G T C T G A A C T G A G C T C G A T A C G T A C G T
C A T G G T A C G T C A C G T A A T G C G T A C A C G T G T A C C G T A A C G T C G A T C G T A C G A T A T C G C G A T C A G T A G C T

NFYA/MA0060.2/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GACCTSAYTAGTT--
AGAGTGCTGATTGGTCCA
 A C G T A C G T A C G T A C T G C T G A A G T C A G T C A C G T A T C G G T C A G A T C A C G T C T G A A C T G A G C T C G A T A C G T A C G T
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A

PH0150.1_Pou4f3/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GACCTSAYTAGTT---
GACNTCATTAATAANN
 A C T G C T G A A G T C A G T C A C G T A T C G G T C A G A T C A C G T C T G A A C T G A G C T C G A T A C G T A C G T A C G T
C T A G C T G A T G A C G A T C C A G T G T A C C G T A C G A T C G A T C G T A C T G A C G A T C G T A G T C A A G T C C G A T