Information for 7-CAGCCACCCAGCA (Motif 9)

A G T C G T C A A C T G G T A C G A T C T C G A G T A C A G T C A G T C C G T A A C T G G T A C G T C A
Reverse Opposite:
A C G T A C T G G T A C C G A T C T A G C T A G A C T G A G C T C A T G A C T G A G T C A C G T A C T G
p-value:1e-10
log p-value:-2.523e+01
Information Content per bp:1.789
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.35%
Number of Background Sequences with motif36.3
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets49.5 +/- 21.5bp
Average Position of motif in Background48.7 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0206.1_Zic2_2/Jaspar

Match Rank:1
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CAGCCACCCAGCA-----
---CCACACAGCAGGAGA
 A G T C G T C A A C T G G T A C G A T C T C G A G T A C A G T C A G T C C G T A A C T G G T A C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CAGCCACCCAGCA-----
---CCACACAGCAGGAGA
 A G T C G T C A A C T G G T A C G A T C T C G A G T A C A G T C A G T C C G T A A C T G G T A C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCACCCAGCA-
SCAGYCADGCATGAC
 A C G T A G T C G T C A A C T G G T A C G A T C T C G A G T A C A G T C A G T C C G T A A C T G G T A C G T C A A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CAGCCACCCAGCA
CAGCC--------
 A G T C G T C A A C T G G T A C G A T C T C G A G T A C A G T C A G T C C G T A A C T G G T A C G T C A
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CAGCCACCCAGCA
TGGCAGNCTGCCAG--
 A C G T A C G T A C G T A G T C G T C A A C T G G T A C G A T C T C G A G T A C A G T C A G T C C G T A A C T G G T A C G T C A
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCACCCAGCA
CACAGN---------
 A C G T A C G T A G T C G T C A A C T G G T A C G A T C T C G A G T A C A G T C A G T C C G T A A C T G G T A C G T C A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.55
Offset:6
Orientation:forward strand
Alignment:CAGCCACCCAGCA-----
------CACAGCAGGGGG
 A G T C G T C A A C T G G T A C G A T C T C G A G T A C A G T C A G T C C G T A A C T G G T A C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCACCCAGCA
BCAGACWA------
 A C G T A G T C G T C A A C T G G T A C G A T C T C G A G T A C A G T C A G T C C G T A A C T G G T A C G T C A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:CAGCCACCCAGCA--
-----DCTCAGCAGG
 A G T C G T C A A C T G G T A C G A T C T C G A G T A C A G T C A G T C C G T A A C T G G T A C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

PB0151.1_Myf6_2/Jaspar

Match Rank:10
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CAGCCACCCAGCA
AGCAACAGCCGCACC---
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A A C T G G T A C G A T C T C G A G T A C A G T C A G T C C G T A A C T G G T A C G T C A
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C A C G T A C G T A C G T