Information for 1-YRRCCAATSRGMG (Motif 1)

A G T C T C G A C T A G A G T C A T G C C G T A C T G A A G C T T A G C T C A G T A C G G T C A C T A G
Reverse Opposite:
G A T C C A G T A T G C A G T C A T C G C T G A A G C T C G A T A T C G A C T G G A T C A G C T T C A G
p-value:1e-180
log p-value:-4.156e+02
Information Content per bp:1.626
Number of Target Sequences with motif204.0
Percentage of Target Sequences with motif59.82%
Number of Background Sequences with motif1905.9
Percentage of Background Sequences with motif4.43%
Average Position of motif in Targets48.7 +/- 25.5bp
Average Position of motif in Background49.5 +/- 40.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.95
Offset:1
Orientation:forward strand
Alignment:YRRCCAATSRGMG
-AGCCAATCGG--
 A G T C T C G A C T A G A G T C A T G C C G T A C T G A A G C T T A G C T C A G T A C G G T C A C T A G
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--YRRCCAATSRGMG
ACTAGCCAATCA---
 A C G T A C G T A G T C T C G A C T A G A G T C A T G C C G T A C T G A A G C T T A G C T C A G T A C G G T C A C T A G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.91
Offset:-4
Orientation:forward strand
Alignment:----YRRCCAATSRGMG
AAATGGACCAATCAG--
 A C G T A C G T A C G T A C G T A G T C T C G A C T A G A G T C A T G C C G T A C T G A A G C T T A G C T C A G T A C G G T C A C T A G
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-YRRCCAATSRGMG----
TGGACCAATCAGCACTCT
 A C G T A G T C T C G A C T A G A G T C A T G C C G T A C T G A A G C T T A G C T C A G T A C G G T C A C T A G A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:YRRCCAATSRGMG
-TGCCAA------
 A G T C T C G A C T A G A G T C A T G C C G T A C T G A A G C T T A G C T C A G T A C G G T C A C T A G
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:6
Score:0.72
Offset:3
Orientation:forward strand
Alignment:YRRCCAATSRGMG
---CCAATCAA--
 A G T C T C G A C T A G A G T C A T G C C G T A C T G A A G C T T A G C T C A G T A C G G T C A C T A G
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T

PH0089.1_Isx/Jaspar

Match Rank:7
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-YRRCCAATSRGMG--
ACNNCTAATTAGNNNN
 A C G T A G T C T C G A C T A G A G T C A T G C C G T A C T G A A G C T T A G C T C A G T A C G G T C A C T A G A C G T A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-YRRCCAATSRGMG
CGTGCCAAG-----
 A C G T A G T C T C G A C T A G A G T C A T G C C G T A C T G A A G C T T A G C T C A G T A C G G T C A C T A G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:9
Score:0.67
Offset:3
Orientation:forward strand
Alignment:YRRCCAATSRGMG
---CCAATTAA--
 A G T C T C G A C T A G A G T C A T G C C G T A C T G A A G C T T A G C T C A G T A C G G T C A C T A G
A C G T A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T A C G T

MSX1/MA0666.1/Jaspar

Match Rank:10
Score:0.67
Offset:3
Orientation:forward strand
Alignment:YRRCCAATSRGMG
---CCAATTAG--
 A G T C T C G A C T A G A G T C A T G C C G T A C T G A A G C T T A G C T C A G T A C G G T C A C T A G
A C G T A C G T A C G T A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G A C G T A C G T