Information for 5-CCACCCAGCAGATCAA (Motif 6)

A G T C A G T C C T G A A G T C A G T C A G T C C G T A C T A G A G T C G T C A A C T G C G T A A G C T A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T C T A G C T G A A C G T T G A C C A G T A C T G A G T C A C G T A C T G C T A G A C T G A G C T A C T G A C T G
p-value:1e-13
log p-value:-3.044e+01
Information Content per bp:1.908
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif0.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.7 +/- 21.3bp
Average Position of motif in Background56.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCACCCAGCAGATCAA
CCACACAGCAGGAGA-
 A G T C A G T C C T G A A G T C A G T C A G T C C G T A C T A G A G T C G T C A A C T G C G T A A G C T A G T C C G T A C G T A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCACCCAGCAGATCAA
CCACACAGCAGGAGA-
 A G T C A G T C C T G A A G T C A G T C A G T C C G T A C T A G A G T C G T C A A C T G C G T A A G C T A G T C C G T A C G T A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0167.1_Sox13_2/Jaspar

Match Rank:3
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------CCACCCAGCAGATCAA
ANNTNCCCACCCANNAC-----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G T C A G T C A G T C C G T A C T A G A G T C G T C A A C T G C G T A A G C T A G T C C G T A C G T A
G T C A C G T A C G A T C G A T C G T A G T A C G T A C T A G C C G T A G A T C G T A C G T A C C T G A C T G A G A C T G C T A G A T C A C G T A C G T A C G T A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:4
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCACCCAGCAGATCAA
GGACCACCCACG-------
 A C G T A C G T A C G T A G T C A G T C C T G A A G T C A G T C A G T C C G T A C T A G A G T C G T C A A C T G C G T A A G C T A G T C C G T A C G T A
C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0114.1_Egr1_2/Jaspar

Match Rank:5
Score:0.51
Offset:-6
Orientation:reverse strand
Alignment:------CCACCCAGCAGATCAA
NNAGTCCCACTCNNNN------
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G T C A G T C A G T C C G T A C T A G A G T C G T C A A C T G C G T A A G C T A G T C C G T A C G T A
T G A C G A T C C G T A C T A G G C A T G T A C G A T C G A T C G T C A A G T C A G C T G A T C T A G C C T A G T G A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:6
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:CCACCCAGCAGATCAA
----HCAGCTGDTN--
 A G T C A G T C C T G A A G T C A G T C A G T C C G T A C T A G A G T C G T C A A C T G C G T A A G C T A G T C C G T A C G T A
A C G T A C G T A C G T A C G T G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T A C G T A C G T

PH0016.1_Cux1_1/Jaspar

Match Rank:7
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:CCACCCAGCAGATCAA-----
----TNAGNTGATCAACCGGT
 A G T C A G T C C T G A A G T C A G T C A G T C C G T A C T A G A G T C G T C A A C T G C G T A A G C T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T T A G C G C T A A T C G C A T G C G A T C T A G C G T A A G C T G A T C C G T A C T G A A G T C A G T C C T A G T A C G G A C T

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CCACCCAGCAGATCAA
GAGCACAGCAGGACA-
 A G T C A G T C C T G A A G T C A G T C A G T C C G T A C T A G A G T C G T C A A C T G C G T A A G C T A G T C C G T A C G T A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:9
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--CCACCCAGCAGATCAA
AGCCACTCAAG-------
 A C G T A C G T A G T C A G T C C T G A A G T C A G T C A G T C C G T A C T A G A G T C G T C A A C T G C G T A A G C T A G T C C G T A C G T A
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CCACCCAGCAGATCAA
--DCTCAGCAGG----
 A G T C A G T C C T G A A G T C A G T C A G T C C G T A C T A G A G T C G T C A A C T G C G T A A G C T A G T C C G T A C G T A
A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T