Information for 3-CTCATTTAAATGA (Motif 6)

G T A C A C G T A G T C C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C G T C A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C T G C G T A A C T G
p-value:1e-5
log p-value:-1.365e+01
Information Content per bp:1.961
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif5.71%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.0 +/- 38.0bp
Average Position of motif in Background31.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CTCATTTAAATGA
--NATTCAAAT--
 G T A C A C G T A G T C C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C T G C G T A
A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTCATTTAAATGA
CTCATTTGCATW-
 G T A C A C G T A G T C C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C T G C G T A
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A A C G T

PB0005.1_Bbx_1/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CTCATTTAAATGA----
--TAATTCAATGAAGTG
 G T A C A C G T A G T C C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G C A T G C T A C T G A C G A T C G A T T G A C G C T A C G T A C G A T A C T G C G T A G C T A A T C G G C A T C T A G

POU1F1/MA0784.1/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTCATTTAAATGA-
CTAATTTGCATATT
 G T A C A C G T A G T C C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C T G C G T A A C G T
G A T C G C A T T G C A G C T A C A G T G C A T C G A T T C A G G T A C C T G A G A C T G C T A G C A T G C A T

BARHL2/MA0635.1/Jaspar

Match Rank:5
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CTCATTTAAATGA-
----GCTAAACGGT
 G T A C A C G T A G T C C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C T G C G T A A C G T
A C G T A C G T A C G T A C G T T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTCATTTAAATGA
NGCAATTAAA---
 G T A C A C G T A G T C C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C T G C G T A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T

PB0081.1_Tcf1_1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CTCATTTAAATGA---
ACTTAGTTAACTAAAAA
 A C G T G T A C A C G T A G T C C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C T G C G T A A C G T A C G T A C G T
T G C A G A T C A G C T G A C T T C G A C T A G G A C T C G A T G C T A C G T A A G T C G A C T C T G A T C G A C T G A G T C A C T G A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CTCATTTAAATGA
BTVATTWGCATA-
 G T A C A C G T A G T C C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C T G C G T A
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T

POU6F2/MA0793.1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CTCATTTAAATGA
AGCTCATTAT-----
 A C G T A C G T G T A C A C G T A G T C C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C T G C G T A
C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T A C G T A C G T A C G T A C G T A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CTCATTTAAATGA
NNCAATTANN---
 G T A C A C G T A G T C C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C T G C G T A
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C A C G T A C G T A C G T