Information for 3-GTAATNTTCTANGAGT (Motif 3)

T C A G G A C T C G T A G T C A C G A T A G T C A C G T A C G T G A T C C A G T C T G A A C G T A T C G C G T A A C T G A G C T
Reverse Opposite:
T C G A G T A C C G A T A T G C C G T A A G C T G C T A C T A G T C G A C G T A A C T G C G T A A C G T A C G T C T G A A G T C
p-value:1e-11
log p-value:-2.543e+01
Information Content per bp:1.657
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif18.75%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.7 +/- 23.3bp
Average Position of motif in Background74.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HSF2/MA0770.1/Jaspar

Match Rank:1
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GTAATNTTCTANGAGT
-GAANGTTCTAGAA--
 T C A G G A C T C G T A G T C A C G A T A G T C A C G T A C G T G A T C C A G T C T G A A C G T A T C G C G T A A C T G A G C T
A C G T T C A G C T G A G C T A G A T C T C A G G C A T C A G T G A T C A G C T T C G A A C T G G T C A G C T A A C G T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:2
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GTAATNTTCTANGAGT
CTAATATTGCTAAA--
 T C A G G A C T C G T A G T C A C G A T A G T C A C G T A C G T G A T C C A G T C T G A A C G T A T C G C G T A A C T G A G C T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A A C G T A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GTAATNTTCTANGAGT
CTAATATTGCTAAA--
 T C A G G A C T C G T A G T C A C G A T A G T C A C G T A C G T G A T C C A G T C T G A A C G T A T C G C G T A A C T G A G C T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A A C G T A C G T

HSF1/MA0486.2/Jaspar

Match Rank:4
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GTAATNTTCTANGAGT
-GAACGTTCTAGAA--
 T C A G G A C T C G T A G T C A C G A T A G T C A C G T A C G T G A T C C A G T C T G A A C G T A T C G C G T A A C T G A G C T
A C G T C T A G G C T A C G T A A G T C T C A G C G A T C A G T A G T C A C G T T C G A A C T G G T C A G C T A A C G T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:5
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GTAATNTTCTANGAGT---
---ANATTTTACGAGNNNN
 T C A G G A C T C G T A G T C A C G A T A G T C A C G T A C G T G A T C C A G T C T G A A C G T A T C G C G T A A C T G A G C T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:6
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GTAATNTTCTANGAGT
-----NTTTTACGAGN
 T C A G G A C T C G T A G T C A C G A T A G T C A C G T A C G T G A T C C A G T C T G A A C G T A T C G C G T A A C T G A G C T
A C G T A C G T A C G T A C G T A C G T C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GTAATNTTCTANGAGT
TAGAANVTTCTAGAA--
 A C G T T C A G G A C T C G T A G T C A C G A T A G T C A C G T A C G T G A T C C A G T C T G A A C G T A T C G C G T A A C T G A G C T
G A C T C T G A T C A G T G C A C G T A A T G C T A C G G A C T C A G T A G T C G A C T C T G A C A T G T C G A C T G A A C G T A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:8
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GTAATNTTCTANGAGT---
---NAATTTTACGAGNTNN
 T C A G G A C T C G T A G T C A C G A T A G T C A C G T A C G T G A T C C A G T C T G A A C G T A T C G C G T A A C T G A G C T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

PB0146.1_Mafk_2/Jaspar

Match Rank:9
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GTAATNTTCTANGAGT
GAAAAAATTGCAAGG---
 A C G T A C G T T C A G G A C T C G T A G T C A C G A T A G T C A C G T A C G T G A T C C A G T C T G A A C G T A T C G C G T A A C T G A G C T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G A C G T A C G T A C G T

HSF4/MA0771.1/Jaspar

Match Rank:10
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GTAATNTTCTANGAGT
-GAANNTTCTAGAA--
 T C A G G A C T C G T A G T C A C G A T A G T C A C G T A C G T G A T C C A G T C T G A A C G T A T C G C G T A A C T G A G C T
A C G T T C A G G C T A G C T A A G T C T C A G C G A T C G A T T A G C A G C T T C G A A T C G G T C A G C T A A C G T A C G T