Information for 5-AGGCWGATGAGCCTGK (Motif 8)

C G T A C A T G A C T G A G T C G C A T C T A G G C T A C G A T T A C G C G T A A C T G G T A C G T A C A C G T A C T G C A G T
Reverse Opposite:
G T C A A G T C C G T A A C T G A C T G G T A C G A C T A T G C G C T A C G A T G A T C C G T A T A C G G T A C G A T C C G A T
p-value:1e-8
log p-value:-1.913e+01
Information Content per bp:1.636
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif3.68%
Number of Background Sequences with motif30.4
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets60.0 +/- 26.9bp
Average Position of motif in Background53.0 +/- 33.7bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0151.1_Myf6_2/Jaspar

Match Rank:1
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:AGGCWGATGAGCCTGK----
-----GGNGCGNCTGTTNNN
 C G T A C A T G A C T G A G T C G C A T C T A G G C T A C G A T T A C G C G T A A C T G G T A C G T A C A C G T A C T G C A G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

POL002.1_INR/Jaspar

Match Rank:2
Score:0.52
Offset:8
Orientation:reverse strand
Alignment:AGGCWGATGAGCCTGK
--------NNNANTGA
 C G T A C A T G A C T G A G T C G C A T C T A G G C T A C G A T T A C G C G T A A C T G G T A C G T A C A C G T A C T G C A G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:3
Score:0.51
Offset:3
Orientation:forward strand
Alignment:AGGCWGATGAGCCTGK--
---VAGRACAKNCTGTBC
 C G T A C A T G A C T G A G T C G C A T C T A G G C T A C G A T T A C G C G T A A C T G G T A C G T A C A C G T A C T G C A G T A C G T A C G T
A C G T A C G T A C G T T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-AGGCWGATGAGCCTGK
WATGCAAATGAG-----
 A C G T C G T A C A T G A C T G A G T C G C A T C T A G G C T A C G A T T A C G C G T A A C T G G T A C G T A C A C G T A C T G C A G T
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T A C G T A C G T A C G T A C G T

Klf12/MA0742.1/Jaspar

Match Rank:5
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:AGGCWGATGAGCCTGK--
---NANAAGGGCGTGGTC
 C G T A C A T G A C T G A G T C G C A T C T A G G C T A C G A T T A C G C G T A A C T G G T A C G T A C A C G T A C T G C A G T A C G T A C G T
A C G T A C G T A C G T C G T A C G T A C G A T C G T A C G T A C T A G T C A G C T A G G A T C C A T G A C G T A T C G C A T G A G C T G T A C

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.49
Offset:11
Orientation:forward strand
Alignment:AGGCWGATGAGCCTGK-
-----------GCTGTG
 C G T A C A T G A C T G A G T C G C A T C T A G G C T A C G A T T A C G C G T A A C T G G T A C G T A C A C G T A C T G C A G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

PB0149.1_Myb_2/Jaspar

Match Rank:7
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---AGGCWGATGAGCCTGK
NNNTGGCAGTTGGTNN---
 A C G T A C G T A C G T C G T A C A T G A C T G A G T C G C A T C T A G G C T A C G A T T A C G C G T A A C T G G T A C G T A C A C G T A C T G C A G T
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G A C G T A C G T A C G T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:8
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--AGGCWGATGAGCCTGK
AAGGCCAGATGGTCCGG-
 A C G T A C G T C G T A C A T G A C T G A G T C G C A T C T A G G C T A C G A T T A C G C G T A A C T G G T A C G T A C A C G T A C T G C A G T
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.46
Offset:-1
Orientation:forward strand
Alignment:-AGGCWGATGAGCCTGK
TATGCWAATBAV-----
 A C G T C G T A C A T G A C T G A G T C G C A T C T A G G C T A C G A T T A C G C G T A A C T G G T A C G T A C A C G T A C T G C A G T
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T A C G T A C G T A C G T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:10
Score:0.46
Offset:4
Orientation:reverse strand
Alignment:AGGCWGATGAGCCTGK---
----AGATGCTRCTRCCHT
 C G T A C A T G A C T G A G T C G C A T C T A G G C T A C G A T T A C G C G T A A C T G G T A C G T A C A C G T A C T G C A G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T