Information for 4-GCAGGCAGGCAGRYAG (Motif 5)

A C T G A G T C G T C A A C T G A C T G A T G C G T C A A C T G C A T G G T A C C G T A A C T G C T A G A G C T C T G A A C T G
Reverse Opposite:
A G T C A G C T C T G A A G T C G T A C A C G T A C T G G T A C G T A C A C G T A T C G A G T C G T A C A C G T A C T G A G T C
p-value:1e-10
log p-value:-2.506e+01
Information Content per bp:1.796
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif2.45%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.8 +/- 22.6bp
Average Position of motif in Background44.5 +/- 11.9bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCAGGCAGGCAGRYAG-
GGAAGGAAGGAAGGAAGG
 A C G T A C T G A G T C G T C A A C T G A C T G A T G C G T C A A C T G C A T G G T A C C G T A A C T G C T A G A G C T C T G A A C T G A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCAGGCAGGCAGRYAG
SCAGYCADGCATGAC-
 A C T G A G T C G T C A A C T G A C T G A T G C G T C A A C T G C A T G G T A C C G T A A C T G C T A G A G C T C T G A A C T G
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCAGGCAGGCAGRYAG
TGGCAGNCTGCCAG----
 A C G T A C G T A C T G A G T C G T C A A C T G A C T G A T G C G T C A A C T G C A T G G T A C C G T A A C T G C T A G A G C T C T G A A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:GCAGGCAGGCAGRYAG
---AGGTGNCAGACAG
 A C T G A G T C G T C A A C T G A C T G A T G C G T C A A C T G C A T G G T A C C G T A A C T G C T A G A G C T C T G A A C T G
A C G T A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----GCAGGCAGGCAGRYAG
CACAGCAGGGGG--------
 A C G T A C G T A C G T A C G T A C T G A G T C G T C A A C T G A C T G A T G C G T C A A C T G C A T G G T A C C G T A A C T G C T A G A G C T C T G A A C T G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.49
Offset:-5
Orientation:reverse strand
Alignment:-----GCAGGCAGGCAGRYAG
DCHCAGCAGGRGGCC------
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C G T C A A C T G A C T G A T G C G T C A A C T G C A T G G T A C C G T A A C T G C T A G A G C T C T G A A C T G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGCAGGCAGRYAG
NGTAGGTTGGCATNNN-
 A C G T A C T G A G T C G T C A A C T G A C T G A T G C G T C A A C T G C A T G G T A C C G T A A C T G C T A G A G C T C T G A A C T G
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:8
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--GCAGGCAGGCAGRYAG
TBGCACGCAA--------
 A C G T A C G T A C T G A G T C G T C A A C T G A C T G A T G C G T C A A C T G C A T G G T A C C G T A A C T G C T A G A G C T C T G A A C T G
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:9
Score:0.48
Offset:0
Orientation:forward strand
Alignment:GCAGGCAGGCAGRYAG
ACAGGAAGTG------
 A C T G A G T C G T C A A C T G A C T G A T G C G T C A A C T G C A T G G T A C C G T A A C T G C T A G A G C T C T G A A C T G
T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G A C G T A C G T A C G T A C G T A C G T A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:10
Score:0.48
Offset:-8
Orientation:forward strand
Alignment:--------GCAGGCAGGCAGRYAG
AAGGKGRCGCAGGCA---------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C G T C A A C T G A C T G A T G C G T C A A C T G C A T G G T A C C G T A A C T G C T A G A G C T C T G A A C T G
T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T