Information for 3-ACAGACACTATCCACC (Motif 3)

G T C A A G T C G T C A A T C G C G T A A G T C G T C A A G T C A G C T C T G A A C G T A T G C A G T C C G T A G T A C A G T C
Reverse Opposite:
C T A G A C T G A C G T A C T G A T C G C G T A A G C T C T G A A C T G A C G T A C T G A C G T A T G C A C G T A C T G A C G T
p-value:1e-9
log p-value:-2.223e+01
Information Content per bp:1.927
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif7.14%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.7 +/- 24.3bp
Average Position of motif in Background66.0 +/- 6.5bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)2.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF354C/MA0130.1/Jaspar

Match Rank:1
Score:0.58
Offset:9
Orientation:forward strand
Alignment:ACAGACACTATCCACC
---------ATCCAC-
 G T C A A G T C G T C A A T C G C G T A A G T C G T C A A G T C A G C T C T G A A C G T A T G C A G T C C G T A G T A C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----ACAGACACTATCCACC
CAAATCCAGACATCACA----
 A C G T A C G T A C G T A C G T A C G T G T C A A G T C G T C A A T C G C G T A A G T C G T C A A G T C A G C T C T G A A C G T A T G C A G T C C G T A G T A C A G T C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:ACAGACACTATCCACC
CCAGACRSVB------
 G T C A A G T C G T C A A T C G C G T A A G T C G T C A A G T C A G C T C T G A A C G T A T G C A G T C C G T A G T A C A G T C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:ACAGACACTATCCACC
CCAGACAG--------
 G T C A A G T C G T C A A T C G C G T A A G T C G T C A A G T C A G C T C T G A A C G T A T G C A G T C C G T A G T A C A G T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0177.1_Sox7_2/Jaspar

Match Rank:5
Score:0.50
Offset:-7
Orientation:reverse strand
Alignment:-------ACAGACACTATCCACC
NNCNNNCNCANACAATTAGNAC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A G T C G T C A A T C G C G T A A G T C G T C A A G T C A G C T C T G A A C G T A T G C A G T C C G T A G T A C A G T C
T C G A A T C G T G A C C A T G A G C T G T C A A G T C C G T A A T G C C T G A A T G C C G T A A G T C C G T A C G T A G C A T C A G T G C T A T A C G A T G C G C T A T G A C A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:ACAGACACTATCCACC
BCAGACWA--------
 G T C A A G T C G T C A A T C G C G T A A G T C G T C A A G T C A G C T C T G A A C G T A T G C A G T C C G T A G T A C A G T C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0125.1_Gata3_2/Jaspar

Match Rank:7
Score:0.49
Offset:-4
Orientation:forward strand
Alignment:----ACAGACACTATCCACC--
TTTTGTAGATTTTATCGACTTA
 A C G T A C G T A C G T A C G T G T C A A G T C G T C A A T C G C G T A A G T C G T C A A G T C A G C T C T G A A C G T A T G C A G T C C G T A G T A C A G T C A C G T A C G T
G A C T A C G T G C A T C A G T T C A G A G C T G C T A C T A G G C T A G A C T C G A T A C G T G A C T C T G A A C G T G A T C C T A G T C G A A T G C C G A T G C A T G T C A

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:8
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---ACAGACACTATCCACC-
NTGACTCANTTTTTCCANTN
 A C G T A C G T A C G T G T C A A G T C G T C A A T C G C G T A A G T C G T C A A G T C A G C T C T G A A C G T A T G C A G T C C G T A G T A C A G T C A C G T
T C G A G C A T A C T G C G T A A T G C G C A T G T A C C G T A A G C T G C A T A G C T A G C T G A C T A G C T A G T C A G T C G C T A A G C T G A C T A T G C

RREB1/MA0073.1/Jaspar

Match Rank:9
Score:0.48
Offset:4
Orientation:forward strand
Alignment:ACAGACACTATCCACC--------
----CCCCAAACCACCCCCCCCCA
 G T C A A G T C G T C A A T C G C G T A A G T C G T C A A G T C A G C T C T G A A C G T A T G C A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C G T A C G T A C A G T C G T C A G T C A G T C A G T A C A G T C C G T A G T A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C T A G C T G A C

GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:10
Score:0.48
Offset:-1
Orientation:reverse strand
Alignment:-ACAGACACTATCCACC---
NDBAGATRWTATCTVNNNNN
 A C G T G T C A A G T C G T C A A T C G C G T A A G T C G T C A A G T C A G C T C T G A A C G T A T G C A G T C C G T A G T A C A G T C A C G T A C G T A C G T
C G T A C A G T A T G C C G T A A C T G C G T A A C G T T C G A G C T A G A C T C G T A A C G T A G T C C G A T T A C G G C A T A G C T G A T C G A C T G A C T