Information for 2-MCGCTATGTTAATACA (Motif 2)

G T C A A T G C C T A G G T A C C G A T G T C A C G A T T A C G A G C T A C G T C G T A C G T A G A C T C G T A T A G C T C G A
Reverse Opposite:
A C G T A C T G A C G T C T G A A C G T C G A T C G T A C T G A A T G C C G T A A C G T G C T A A C T G G A T C A T C G A C G T
p-value:1e-12
log p-value:-2.771e+01
Information Content per bp:1.723
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif9.52%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.2 +/- 22.7bp
Average Position of motif in Background63.9 +/- 7.7bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXB1/MA0845.1/Jaspar

Match Rank:1
Score:0.68
Offset:4
Orientation:forward strand
Alignment:MCGCTATGTTAATACA
----TATGTAAATAT-
 G T C A A T G C C T A G G T A C C G A T G T C A C G A T T A C G A G C T A C G T C G T A C G T A G A C T C G T A T A G C T C G A
A C G T A C G T A C G T A C G T G C A T C T G A C G A T C T A G G A C T T G C A G C T A C G T A A G C T C T G A G C A T A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:2
Score:0.67
Offset:4
Orientation:forward strand
Alignment:MCGCTATGTTAATACA
----TATGCAAAT---
 G T C A A T G C C T A G G T A C C G A T G T C A C G A T T A C G A G C T A C G T C G T A C G T A G A C T C G T A T A G C T C G A
A C G T A C G T A C G T A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T A C G T A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:3
Score:0.66
Offset:4
Orientation:forward strand
Alignment:MCGCTATGTTAATACA
----TATGCAAAT---
 G T C A A T G C C T A G G T A C C G A T G T C A C G A T T A C G A G C T A C G T C G T A C G T A G A C T C G T A T A G C T C G A
A C G T A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.66
Offset:4
Orientation:forward strand
Alignment:MCGCTATGTTAATACA
----TATGCWAATBAV
 G T C A A T G C C T A G G T A C C G A T G T C A C G A T T A C G A G C T A C G T C G T A C G T A G A C T C G T A T A G C T C G A
A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Foxa2/MA0047.2/Jaspar

Match Rank:5
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:MCGCTATGTTAATACA
--NCTAAGTAAACA--
 G T C A A T G C C T A G G T A C C G A T G T C A C G A T T A C G A G C T A C G T C G T A C G T A G A C T C G T A T A G C T C G A
A C G T A C G T T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A A C G T A C G T

FOXC1/MA0032.2/Jaspar

Match Rank:6
Score:0.65
Offset:4
Orientation:forward strand
Alignment:MCGCTATGTTAATACA
----TATGTAAATAT-
 G T C A A T G C C T A G G T A C C G A T G T C A C G A T T A C G A G C T A C G T C G T A C G T A G A C T C G T A T A G C T C G A
A C G T A C G T A C G T A C G T G C A T C T G A C G A T T C A G G C A T G T C A G T C A C T G A A G C T C T G A G C A T A C G T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:7
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:MCGCTATGTTAATACA-
--NCWRWGTAAACANSV
 G T C A A T G C C T A G G T A C C G A T G T C A C G A T T A C G A G C T A C G T C G T A C G T A G A C T C G T A T A G C T C G A A C G T
A C G T A C G T T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

Arid3b/MA0601.1/Jaspar

Match Rank:8
Score:0.65
Offset:5
Orientation:forward strand
Alignment:MCGCTATGTTAATACA
-----ATATTAATTAA
 G T C A A T G C C T A G G T A C C G A T G T C A C G A T T A C G A G C T A C G T C G T A C G T A G A C T C G T A T A G C T C G A
A C G T A C G T A C G T A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

PB0109.1_Bbx_2/Jaspar

Match Rank:9
Score:0.65
Offset:2
Orientation:forward strand
Alignment:MCGCTATGTTAATACA---
--TGATTGTTAACAGTTGG
 G T C A A T G C C T A G G T A C C G A T G T C A C G A T T A C G A G C T A C G T C G T A C G T A G A C T C G T A T A G C T C G A A C G T A C G T A C G T
A C G T A C G T G A C T T C A G G C T A G A C T A C G T C A T G C A G T A G C T T C G A G T C A G T A C T C G A A T C G G C A T A C G T C T A G T C A G

FOXA1/MA0148.3/Jaspar

Match Rank:10
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:MCGCTATGTTAATACA--
---CAAAGTAAACANNNN
 G T C A A T G C C T A G G T A C C G A T G T C A C G A T T A C G A G C T A C G T C G T A C G T A G A C T C G T A T A G C T C G A A C G T A C G T
A C G T A C G T A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A