Information for 21-BAGTGCCCTCTGC (Motif 41)

A C T G C G T A C T A G A C G T A C T G A G T C A G T C A G T C A G C T A G T C A C G T C T A G A G T C
Reverse Opposite:
A C T G A G T C C G T A A C T G C T G A A C T G A C T G A C T G A G T C C G T A G A T C A C G T T A G C
p-value:1e-8
log p-value:-1.881e+01
Information Content per bp:1.886
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.3 +/- 31.5bp
Average Position of motif in Background45.1 +/- 23.4bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIC2/MA0738.1/Jaspar

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:BAGTGCCCTCTGC
--ATGCCCACC--
 A C T G C G T A C T A G A C G T A C T G A G T C A G T C A G T C A G C T A G T C A C G T C T A G A G T C
A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:BAGTGCCCTCTGC----
---TGACCTTTGCCCTA
 A C T G C G T A C T A G A C G T A C T G A G T C A G T C A G T C A G C T A G T C A C G T C T A G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:BAGTGCCCTCTGC
--CTGACCTTTG-
 A C T G C G T A C T A G A C G T A C T G A G T C A G T C A G T C A G C T A G T C A C G T C T A G A G T C
A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---BAGTGCCCTCTGC----
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C T G C G T A C T A G A C G T A C T G A G T C A G T C A G T C A G C T A G T C A C G T C T A G A G T C A C G T A C G T A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:5
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:BAGTGCCCTCTGC-----
---TGACCTTTGCCCTAN
 A C T G C G T A C T A G A C G T A C T G A G T C A G T C A G T C A G C T A G T C A C G T C T A G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-BAGTGCCCTCTGC------
ANAGTGCCACCTGGTGGCCA
 A C G T A C T G C G T A C T A G A C G T A C T G A G T C A G T C A G T C A G C T A G T C A C G T C T A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.64
Offset:3
Orientation:forward strand
Alignment:BAGTGCCCTCTGC----
---TGACCTTTGCCCCA
 A C T G C G T A C T A G A C G T A C T G A G T C A G T C A G T C A G C T A G T C A C G T C T A G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

CTCF/MA0139.1/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:BAGTGCCCTCTGC------
TAGCGCCCCCTGGTGGCCA
 A C T G C G T A C T A G A C G T A C T G A G T C A G T C A G T C A G C T A G T C A C G T C T A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:BAGTGCCCTCTGC
---TGACCYCT--
 A C T G C G T A C T A G A C G T A C T G A G T C A G T C A G T C A G C T A G T C A C G T C T A G A G T C
A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:BAGTGCCCTCTGC
---TGACCTYA--
 A C T G C G T A C T A G A C G T A C T G A G T C A G T C A G T C A G C T A G T C A C G T C T A G A G T C
A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T