Information for 2-AVTTRAAAGKTGA (Motif 3)

C G T A T C G A C G A T C G A T C T A G G T C A G T C A C G T A A C T G A C T G A C G T C A T G C G T A
Reverse Opposite:
A C G T G T A C T G C A G T A C G T A C A C G T A C G T A C G T G A T C C G T A C G T A A G C T C G A T
p-value:1e-13
log p-value:-3.113e+01
Information Content per bp:1.692
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.21%
Number of Background Sequences with motif68.4
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets50.3 +/- 26.4bp
Average Position of motif in Background52.0 +/- 24.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:AVTTRAAAGKTGA
ACATCAAAGG---
 C G T A T C G A C G A T C G A T C T A G G T C A G T C A C G T A A C T G A C T G A C G T C A T G C G T A
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:AVTTRAAAGKTGA
ACWTCAAAGG---
 C G T A T C G A C G A T C G A T C T A G G T C A G T C A C G T A A C T G A C T G A C G T C A T G C G T A
C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G A C G T A C G T A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--AVTTRAAAGKTGA
AAAGATCAAAGGAA-
 A C G T A C G T C G T A T C G A C G A T C G A T C T A G G T C A G T C A C G T A A C T G A C T G A C G T C A T G C G T A
C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A A C G T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AVTTRAAAGKTGA
ACATCAAAGGNA-
 C G T A T C G A C G A T C G A T C T A G G T C A G T C A C G T A A C T G A C T G A C G T C A T G C G T A
C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:5
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AVTTRAAAGKTGA
-ANGNAAAGGTCA
 C G T A T C G A C G A T C G A T C T A G G T C A G T C A C G T A A C T G A C T G A C G T C A T G C G T A
A C G T C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

PB0082.1_Tcf3_1/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AVTTRAAAGKTGA-
TATAGATCAAAGGAAAA
 A C G T A C G T A C G T C G T A T C G A C G A T C G A T C T A G G T C A G T C A C G T A A C T G A C T G A C G T C A T G C G T A A C G T
G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A

LEF1/MA0768.1/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AVTTRAAAGKTGA
AAAGATCAAAGGGTT
 A C G T A C G T C G T A T C G A C G A T C G A T C T A G G T C A G T C A C G T A A C T G A C T G A C G T C A T G C G T A
T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

PB0083.1_Tcf7_1/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AVTTRAAAGKTGA-
TATAGATCAAAGGAAAA
 A C G T A C G T A C G T C G T A T C G A C G A T C G A T C T A G G T C A G T C A C G T A A C T G A C T G A C G T C A T G C G T A A C G T
A C G T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C A T G C T A

Tcf7/MA0769.1/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AVTTRAAAGKTGA
AAAGATCAAAGG---
 A C G T A C G T C G T A T C G A C G A T C G A T C T A G G T C A G T C A C G T A A C T G A C T G A C G T C A T G C G T A
C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G A C G T A C G T A C G T

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:10
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---AVTTRAAAGKTGA-
NNNAGATCAAAGGANNN
 A C G T A C G T A C G T C G T A T C G A C G A T C G A T C T A G G T C A G T C A C G T A A C T G A C T G A C G T C A T G C G T A A C G T
A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T