Information for 12-GAGYKCACAGTCA (Motif 24)

A C T G C G T A A C T G G A T C A C T G A G T C C G T A A G T C C G T A A C T G A C G T T A G C C G T A
Reverse Opposite:
A C G T A C T G C G T A A G T C A C G T A C T G A C G T A C T G T G A C C T A G A G T C A C G T A G T C
p-value:1e-9
log p-value:-2.225e+01
Information Content per bp:1.915
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets61.2 +/- 9.9bp
Average Position of motif in Background49.4 +/- 18.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr5a2/MA0505.1/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GAGYKCACAGTCA--
AAGTTCAAGGTCAGC
 A C T G C G T A A C T G G A T C A C T G A G T C C G T A A G T C C G T A A C T G A C G T T A G C C G T A A C G T A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GAGYKCACAGTCA
-AGGTCAAGGTCA
 A C T G C G T A A C T G G A T C A C T G A G T C C G T A A G T C C G T A A C T G A C G T T A G C C G T A
A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

PB0170.1_Sox17_2/Jaspar

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GAGYKCACAGTCA------
--GACCACATTCATACAAT
 A C T G C G T A A C T G G A T C A C T G A G T C C G T A A G T C C G T A A C T G A C G T T A G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GAGYKCACAGTCA-
CANAGNNCAAAGTCCA
 A C G T A C G T A C T G C G T A A C T G G A T C A C T G A G T C C G T A A G T C C G T A A C T G A C G T T A G C C G T A A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:GAGYKCACAGTCA
-----CACAGN--
 A C T G C G T A A C T G G A T C A C T G A G T C C G T A A G T C C G T A A C T G A C G T T A G C C G T A
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GAGYKCACAGTCA-
AGAGTCCAAAGTCCA
 A C G T A C T G C G T A A C T G G A T C A C T G A G T C C G T A A G T C C G T A A C T G A C G T T A G C C G T A A C G T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

Hnf4a/MA0114.3/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GAGYKCACAGTCA---
GGGGTCAAAGTCCAAT
 A C T G C G T A A C T G G A T C A C T G A G T C C G T A A G T C C G T A A C T G A C G T T A G C C G T A A C G T A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GAGYKCACAGTCA
-AGGTCAAGGTCA
 A C T G C G T A A C T G G A T C A C T G A G T C C G T A A G T C C G T A A C T G A C G T T A G C C G T A
A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

Nfe2l2/MA0150.2/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GAGYKCACAGTCA-----
---TGCTGAGTCATNNTG
 A C T G C G T A A C T G G A T C A C T G A G T C C G T A A G T C C G T A A C T G A C G T T A G C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A T C G A T G C G A C T C T A G C G T A T A C G A C G T G T A C C G T A A G C T A C T G A T G C G A C T C A T G

Nr2e1/MA0676.1/Jaspar

Match Rank:10
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GAGYKCACAGTCA-
-----AAAAGTCAA
 A C T G C G T A A C T G G A T C A C T G A G T C C G T A A G T C C G T A A C T G A C G T T A G C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A