Information for 6-CCAVCTGCAGCCARGA (Motif 11)

A G T C A G T C T G C A T G A C T A G C G C A T A C T G A G T C C G T A A C T G A G T C A G T C C G T A T C G A C T A G G T C A
Reverse Opposite:
A C G T A G T C A G C T A C G T A C T G C T A G G T A C G C A T C T A G A G T C C G T A A C T G A C T G A C G T C T A G C T A G
p-value:1e-11
log p-value:-2.619e+01
Information Content per bp:1.695
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.52%
Number of Background Sequences with motif31.7
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets47.2 +/- 25.8bp
Average Position of motif in Background49.8 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.58
Offset:8
Orientation:reverse strand
Alignment:CCAVCTGCAGCCARGA
--------TGCCAA--
 A G T C A G T C T G C A T G A C T A G C G C A T A C T G A G T C C G T A A C T G A G T C A G T C C G T A T C G A C T A G G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.57
Offset:6
Orientation:forward strand
Alignment:CCAVCTGCAGCCARGA
------CGTGCCAAG-
 A G T C A G T C T G C A T G A C T A G C G C A T A C T G A G T C C G T A A C T G A G T C A G T C C G T A T C G A C T A G G T C A
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

PH0170.1_Tgif2/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CCAVCTGCAGCCARGA-
-AACTAGCTGTCAATAC
 A G T C A G T C T G C A T G A C T A G C G C A T A C T G A G T C C G T A A C T G A G T C A G T C C G T A T C G A C T A G G T C A A C G T
A C G T G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C

PH0169.1_Tgif1/Jaspar

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CCAVCTGCAGCCARGA--
-NNNCAGCTGTCAATATN
 A G T C A G T C T G C A T G A C T A G C G C A T A C T G A G T C C G T A A C T G A G T C A G T C C G T A T C G A C T A G G T C A A C G T A C G T
A C G T G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CCAVCTGCAGCCARGA
SNGCACCTGCHS------
 A C G T A C G T A G T C A G T C T G C A T G A C T A G C G C A T A C T G A G T C C G T A A C T G A G T C A G T C C G T A T C G A C T A G G T C A
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.55
Offset:7
Orientation:forward strand
Alignment:CCAVCTGCAGCCARGA
-------TTGCCAAG-
 A G T C A G T C T G C A T G A C T A G C G C A T A C T G A G T C C G T A A C T G A G T C A G T C C G T A T C G A C T A G G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:CCAVCTGCAGCCARGA
------GCTGTCAA--
 A G T C A G T C T G C A T G A C T A G C G C A T A C T G A G T C C G T A A C T G A G T C A G T C C G T A T C G A C T A G G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:8
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:CCAVCTGCAGCCARGA-----
------SCAGYCADGCATGAC
 A G T C A G T C T G C A T G A C T A G C G C A T A C T G A G T C C G T A A C T G A G T C A G T C C G T A T C G A C T A G G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PB0150.1_Mybl1_2/Jaspar

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CCAVCTGCAGCCARGA
CGACCAACTGCCGTG----
 A C G T A C G T A C G T A G T C A G T C T G C A T G A C T A G C G C A T A C T G A G T C C G T A A C T G A G T C A G T C C G T A T C G A C T A G G T C A
A G T C A T C G T G C A G A T C G A T C G C T A G T C A A G T C A G C T A C T G G A T C G T A C C T A G G C A T A C T G A C G T A C G T A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CCAVCTGCAGCCARGA
NNAGCAGCTGCT----
 A G T C A G T C T G C A T G A C T A G C G C A T A C T G A G T C C G T A A C T G A G T C A G T C C G T A T C G A C T A G G T C A
T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T