Information for 3-WMAKYAYSATSMWTGY (Motif 4)

G C A T G T C A G T C A A C G T A G T C C G T A A G T C A T G C G T C A A C G T A T G C G T A C C G T A A C G T A T C G G A C T
Reverse Opposite:
C T G A A T G C C G T A C G A T A C T G A T C G C G T A A C G T A T C G C T A G A C G T C T A G G T C A A C G T A C G T C G T A
p-value:1e-9
log p-value:-2.083e+01
Information Content per bp:1.744
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets48.7 +/- 24.5bp
Average Position of motif in Background67.0 +/- 9.4bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0017.1_Cux1_2/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:WMAKYAYSATSMWTGY
TAATGATGATCACTA-
 G C A T G T C A G T C A A C G T A G T C C G T A A G T C A T G C G T C A A C G T A T G C G T A C C G T A A C G T A T C G G A C T
C G A T T G C A T C G A A G C T C A T G G C T A C G A T C T A G C G T A C A G T G A T C T C G A G T A C C G A T C G T A A C G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:2
Score:0.54
Offset:1
Orientation:forward strand
Alignment:WMAKYAYSATSMWTGY
-ATGCATWATGCATRW
 G C A T G T C A G T C A A C G T A G T C C G T A A G T C A T G C G T C A A C G T A T G C G T A C C G T A A C G T A T C G G A C T
A C G T C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

PB0069.1_Sox21_1/Jaspar

Match Rank:3
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--WMAKYAYSATSMWTGY
NNTAATTATAATNANN--
 A C G T A C G T G C A T G T C A G T C A A C G T A G T C C G T A A G T C A T G C G T C A A C G T A T G C G T A C C G T A A C G T A T C G G A C T
G T A C G C A T G C A T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C G T A A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:4
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:WMAKYAYSATSMWTGY
--NNTNTCATGAATGT
 G C A T G T C A G T C A A C G T A G T C C G T A A G T C A T G C G T C A A C G T A T G C G T A C C G T A A C G T A T C G G A C T
A C G T A C G T A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

PB0079.1_Sry_1/Jaspar

Match Rank:5
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--WMAKYAYSATSMWTGY
TATAATTATAATATTC--
 A C G T A C G T G C A T G T C A G T C A A C G T A G T C C G T A A G T C A T G C G T C A A C G T A T G C G T A C C G T A A C G T A T C G G A C T
A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:6
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:WMAKYAYSATSMWTGY-
-----ATGATKGATGRC
 G C A T G T C A G T C A A C G T A G T C C G T A A G T C A T G C G T C A A C G T A T G C G T A C C G T A A C G T A T C G G A C T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

PB0064.1_Sox14_1/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--WMAKYAYSATSMWTGY
GCTAATTATAATTATC--
 A C G T A C G T G C A T G T C A G T C A A C G T A G T C C G T A A G T C A T G C G T C A A C G T A T G C G T A C C G T A A C G T A T C G G A C T
C A T G G A T C G A C T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C A G T G T A C A C G T A C G T

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:8
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:WMAKYAYSATSMWTGY----
GAAGTANCACGAATNMRAGT
 G C A T G T C A G T C A A C G T A G T C C G T A A G T C A T G C G T C A A C G T A T G C G T A C C G T A A C G T A T C G G A C T A C G T A C G T A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-WMAKYAYSATSMWTGY
BTVATTWGCATA-----
 A C G T G C A T G T C A G T C A A C G T A G T C C G T A A G T C A T G C G T C A A C G T A T G C G T A C C G T A A C G T A T C G G A C T
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T A C G T A C G T A C G T

POU3F3/MA0788.1/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:WMAKYAYSATSMWTGY
AAATTAGCATAAT---
 G C A T G T C A G T C A A C G T A G T C C G T A A G T C A T G C G T C A A C G T A T G C G T A C C G T A A C G T A T C G G A C T
G C T A G C T A C G T A G A C T G C A T C G T A T C A G G T A C T G C A G C A T G C T A G C T A G C A T A C G T A C G T A C G T