Information for 4-CCATGTCAAG (Motif 10)

A G T C A G T C C G T A A C G T A C T G A C G T A G T C C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A C T G C G T A A G T C C G T A A C G T A C T G A C T G
p-value:1e-3
log p-value:-6.949e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif8.33%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.0 +/- 0.0bp
Average Position of motif in Background58.5 +/- 18.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS3/MA0775.1/Jaspar

Match Rank:1
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:CCATGTCAAG
-CCTGTCAA-
 A G T C A G T C C G T A A C G T A C T G A C G T A G T C C G T A C G T A A C T G
A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:2
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:CCATGTCAAG
--NTGTCAN-
 A G T C A G T C C G T A A C G T A C T G A C G T A G T C C G T A C G T A A C T G
A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CCATGTCAAG
-GCTGTCAA-
 A G T C A G T C C G T A A C G T A C T G A C G T A G T C C G T A C G T A A C T G
A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CCATGTCAAG
-RHTGWCAR-
 A G T C A G T C C G T A A C G T A C T G A C G T A G T C C G T A C G T A A C T G
A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CCATGTCAAG-
---TGTCANYT
 A G T C A G T C C G T A A C G T A C T G A C G T A G T C C G T A C G T A A C T G A C G T
A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CCATGTCAAG
GGTTGCCATGGCAA-
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C T G A C G T A G T C C G T A C G T A A C T G
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CCATGTCAAG
NGTTGCCATGGCAA-
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C T G A C G T A G T C C G T A C G T A A C T G
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:8
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CCATGTCAAG----
--AGGTCAAGGTCA
 A G T C A G T C C G T A A C G T A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

Rfx1/MA0509.1/Jaspar

Match Rank:9
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CCATGTCAAG
GTTGCCATGGCAAC
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C T G A C G T A G T C C G T A C G T A A C T G
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCATGTCAAG-
-GGTGCCAAGT
 A G T C A G T C C G T A A C G T A C T G A C G T A G T C C G T A C G T A A C T G A C G T
A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T