| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
| 1 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-13 | -3.090e+01 | 0.0000 | 100.0 | 10.54% | 2184.5 | 4.61% | motif file (matrix) |
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| 2 |
| c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-12 | -2.923e+01 | 0.0000 | 73.0 | 7.69% | 1382.8 | 2.92% | motif file (matrix) |
svg |
| 3 |
| Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-11 | -2.741e+01 | 0.0000 | 80.0 | 8.43% | 1657.6 | 3.50% | motif file (matrix) |
svg |
| 4 |
| c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-11 | -2.618e+01 | 0.0000 | 92.0 | 9.69% | 2096.3 | 4.42% | motif file (matrix) |
svg |
| 5 |
| CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-10 | -2.531e+01 | 0.0000 | 78.0 | 8.22% | 1665.1 | 3.51% | motif file (matrix) |
svg |
| 6 |
| NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer | 1e-10 | -2.459e+01 | 0.0000 | 129.0 | 13.59% | 3491.9 | 7.36% | motif file (matrix) |
svg |
| 7 |
| BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-9 | -2.261e+01 | 0.0000 | 134.0 | 14.12% | 3792.2 | 8.00% | motif file (matrix) |
svg |
| 8 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-8 | -1.903e+01 | 0.0000 | 64.0 | 6.74% | 1438.6 | 3.03% | motif file (matrix) |
svg |
| 9 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-7 | -1.840e+01 | 0.0000 | 94.0 | 9.91% | 2524.7 | 5.32% | motif file (matrix) |
svg |
| 10 |
| bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-5 | -1.179e+01 | 0.0003 | 45.0 | 4.74% | 1094.1 | 2.31% | motif file (matrix) |
svg |
| 11 |
| Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer | 1e-2 | -5.932e+00 | 0.0878 | 60.0 | 6.32% | 2051.4 | 4.33% | motif file (matrix) |
svg |
| 12 |
| HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-2 | -5.810e+00 | 0.0909 | 106.0 | 11.17% | 4046.5 | 8.53% | motif file (matrix) |
svg |
| 13 |
| THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer | 1e-2 | -5.647e+00 | 0.0988 | 214.0 | 22.55% | 9009.3 | 19.00% | motif file (matrix) |
svg |
| 14 |
| AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer | 1e-2 | -5.498e+00 | 0.1065 | 206.0 | 21.71% | 8664.6 | 18.27% | motif file (matrix) |
svg |
| 15 |
| RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer | 1e-2 | -5.380e+00 | 0.1119 | 10.0 | 1.05% | 184.4 | 0.39% | motif file (matrix) |
svg |
| 16 |
| Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer | 1e-2 | -5.348e+00 | 0.1119 | 13.0 | 1.37% | 278.4 | 0.59% | motif file (matrix) |
svg |
