Information for 4-GAGAGAGCGA (Motif 9)

T C A G G T C A A T C G C T G A T C A G G T C A T C A G T G A C A T C G C G T A
Reverse Opposite:
G C A T T A G C A C T G A G T C C A G T A G T C G A C T T A G C C A G T A G T C
p-value:1e-11
log p-value:-2.559e+01
Information Content per bp:1.517
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif3.48%
Number of Background Sequences with motif383.6
Percentage of Background Sequences with motif0.81%
Average Position of motif in Targets59.9 +/- 27.1bp
Average Position of motif in Background52.5 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GAGAGAGCGA
----CAGCC-
 T C A G G T C A A T C G C T G A T C A G G T C A T C A G T G A C A T C G C G T A
A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GAGAGAGCGA
--CGGAGC--
 T C A G G T C A A T C G C T G A T C A G G T C A T C A G T G A C A T C G C G T A
A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T

IRF7/MA0772.1/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GAGAGAGCGA----
ACGAAAGCGAAAGT
 T C A G G T C A A T C G C T G A T C A G G T C A T C A G T G A C A T C G C G T A A C G T A C G T A C G T A C G T
G T C A T G A C A C T G T G C A C G T A G T C A T C A G G A T C C T A G G T C A T C G A G C T A T C A G G C A T

E2F6/MA0471.1/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GAGAGAGCGA
GGGCGGGAAGG-
 A C G T A C G T T C A G G T C A A T C G C T G A T C A G G T C A T C A G T G A C A T C G C G T A
C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G A C G T

IRF2/MA0051.1/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GAGAGAGCGA---------
-GGAAAGCGAAACCAAAAC
 T C A G G T C A A T C G C T G A T C A G G T C A T C A G T G A C A T C G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A T C G C T A G C G T A C G T A C G T A C T A G A G C T A C T G C G T A C G T A C G T A A T C G A G T C C T G A C G T A C G T A G C T A G T A C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGAGCGA-
AGGTGNCAGACAG
 A C G T A C G T T C A G G T C A A T C G C T G A T C A G G T C A T C A G T G A C A T C G C G T A A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

PB0076.1_Sp4_1/Jaspar

Match Rank:7
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---GAGAGAGCGA----
NNNAAGGGGGCGGGNNN
 A C G T A C G T A C G T T C A G G T C A A T C G C T G A T C A G G T C A T C A G T G A C A T C G C G T A A C G T A C G T A C G T A C G T
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

PB0140.1_Irf6_2/Jaspar

Match Rank:8
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------GAGAGAGCGA
NNNACCGAGAGTNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T T C A G G T C A A T C G C T G A T C A G G T C A T C A G T G A C A T C G C G T A
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T A C G T

PRDM1/MA0508.1/Jaspar

Match Rank:9
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----GAGAGAGCGA
AGAAAGTGAAAGTGA
 A C G T A C G T A C G T A C G T A C G T T C A G G T C A A T C G C T G A T C A G G T C A T C A G T G A C A T C G C G T A
C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GAGAGAGCGA
GGCGGGAARN-
 A C G T T C A G G T C A A T C G C T G A T C A G G T C A T C A G T G A C A T C G C G T A
T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G A C G T