Information for 2-CTAGCCACCGCTT (Motif 6)

A G T C A C G T G C T A A T C G G T A C A G T C G T C A A G T C A T G C A T C G A G T C A C G T A G C T
Reverse Opposite:
C T G A C G T A A C T G A T G C A T C G A C T G A C G T A C T G C A T G A T G C C A G T C G T A A C T G
p-value:1e-11
log p-value:-2.666e+01
Information Content per bp:1.806
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif11.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets50.8 +/- 31.4bp
Average Position of motif in Background67.2 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0180.1_Sp4_2/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTAGCCACCGCTT--
NNGGCCACGCCTTTN
 A G T C A C G T G C T A A T C G G T A C A G T C G T C A A G T C A T G C A T C G A G T C A C G T A G C T A C G T A C G T
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

PB0010.1_Egr1_1/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTAGCCACCGCTT-
TCCGCCCCCGCATT
 A G T C A C G T G C T A A T C G G T A C A G T C G T C A A G T C A T G C A T C G A G T C A C G T A G C T A C G T
G A C T G T A C G A T C T C A G A G T C A T G C A G T C G T A C G A T C A C T G A G T C C G T A G A C T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:CTAGCCACCGCTT
--------NGCTN
 A G T C A C G T G C T A A T C G G T A C A G T C G T C A A G T C A T G C A T C G A G T C A C G T A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

PH0164.1_Six4/Jaspar

Match Rank:4
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CTAGCCACCGCTT-
ATAAATGACACCTATCA
 A C G T A C G T A C G T A G T C A C G T G C T A A T C G G T A C A G T C G T C A A G T C A T G C A T C G A G T C A C G T A G C T A C G T
G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A

PB0157.1_Rara_2/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CTAGCCACCGCTT-
NNCNTGACCCCGCTCT
 A C G T A C G T A G T C A C G T G C T A A T C G G T A C A G T C G T C A A G T C A T G C A T C G A G T C A C G T A G C T A C G T
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:6
Score:0.53
Offset:6
Orientation:forward strand
Alignment:CTAGCCACCGCTT--
------ACCACTTAA
 A G T C A C G T G C T A A T C G G T A C A G T C G T C A A G T C A T G C A T C G A G T C A C G T A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

NKX2-3/MA0672.1/Jaspar

Match Rank:7
Score:0.53
Offset:6
Orientation:forward strand
Alignment:CTAGCCACCGCTT---
------ACCACTTGAA
 A G T C A C G T G C T A A T C G G T A C A G T C G T C A A G T C A T G C A T C G A G T C A C G T A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

PB0110.1_Bcl6b_2/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CTAGCCACCGCTT---
ATCCCCGCCCCTAAAA
 A G T C A C G T G C T A A T C G G T A C A G T C G T C A A G T C A T G C A T C G A G T C A C G T A G C T A C G T A C G T A C G T
G T C A A C G T A T G C A T G C A G T C G A T C C T A G G A T C T G A C A T G C A G T C C G A T G C T A G T C A G C T A T G C A

EGR1/MA0162.2/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CTAGCCACCGCTT
CCCCCGCCCCCGCC-
 A C G T A C G T A G T C A C G T G C T A A T C G G T A C A G T C G T C A A G T C A T G C A T C G A G T C A C G T A G C T
A T G C G A T C A G T C G T A C G A T C C T A G A G T C A G T C A G T C G T A C A G T C C A T G A T G C T G A C A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:10
Score:0.51
Offset:6
Orientation:forward strand
Alignment:CTAGCCACCGCTT--
------ACCACTTAA
 A G T C A C G T G C T A A T C G G T A C A G T C G T C A A G T C A T G C A T C G A G T C A C G T A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A