Information for 1-GTGCCATGCAHATGTG (Motif 2)

A T C G A C G T A C T G A G T C A G T C C T G A A G C T A C T G A T G C C T G A G A T C C G T A A C G T A T C G A C G T C T A G
Reverse Opposite:
A G T C G T C A A T G C C G T A G C A T C T A G A G C T A T C G A G T C T C G A G A C T A C T G A C T G A G T C C G T A A T G C
p-value:1e-15
log p-value:-3.594e+01
Information Content per bp:1.787
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.7 +/- 27.2bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0147.1_Max_2/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GTGCCATGCAHATGTG
GTGCCACGCGACTG--
 A T C G A C G T A C T G A G T C A G T C C T G A A G C T A C T G A T G C C T G A G A T C C G T A A C G T A T C G A C G T C T A G
A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GTGCCATGCAHATGTG
TTGCCAAG--------
 A T C G A C G T A C T G A G T C A G T C C T G A A G C T A C T G A T G C C T G A G A T C C G T A A C G T A T C G A C G T C T A G
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GTGCCATGCAHATGTG
ATGCCAACC-------
 A T C G A C G T A C T G A G T C A G T C C T G A A G C T A C T G A T G C C T G A G A T C C G T A A C G T A T C G A C G T C T A G
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GTGCCATGCAHATGTG
CGTGCCAAG--------
 A C G T A T C G A C G T A C T G A G T C A G T C C T G A A G C T A C T G A T G C C T G A G A T C C G T A A C G T A T C G A C G T C T A G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GTGCCATGCAHATGTG
ATGCCCACC-------
 A T C G A C G T A C T G A G T C A G T C C T G A A G C T A C T G A T G C C T G A G A T C C G T A A C G T A T C G A C G T C T A G
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GTGCCATGCAHATGTG
GGTGCCAAGT-------
 A C G T A T C G A C G T A C T G A G T C A G T C C T G A A G C T A C T G A T G C C T G A G A T C C G T A A C G T A T C G A C G T C T A G
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GTGCCATGCAHATGTG
-TBGCACGCAA-----
 A T C G A C G T A C T G A G T C A G T C C T G A A G C T A C T G A T G C C T G A G A T C C G T A A C G T A T C G A C G T C T A G
A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T

Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer

Match Rank:8
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----GTGCCATGCAHATGTG
NVCAKCTGGNNNCCAGMTGB-
 A C G T A C G T A C G T A C G T A C G T A T C G A C G T A C T G A G T C A G T C C T G A A G C T A C T G A T G C C T G A G A T C C G T A A C G T A T C G A C G T C T A G
T A C G T G A C T G A C C G T A A C T G T A G C C G A T A C T G A T C G A G C T A T G C T C G A T A G C G T A C C G T A A C T G T G A C G C A T A C T G A C T G A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GTGCCATGCAHATGTG
ACTATGCCAACCTACC---
 A C G T A C G T A C G T A T C G A C G T A C T G A G T C A G T C C T G A A G C T A C T G A T G C C T G A G A T C C G T A A C G T A T C G A C G T C T A G
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GTGCCATGCAHATGTG
----CACGCA------
 A T C G A C G T A C T G A G T C A G T C C T G A A G C T A C T G A T G C C T G A G A T C C G T A A C G T A T C G A C G T C T A G
A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T