Information for 6-ATTAACAAAGCDGATV (Motif 9)

C G T A A C G T A C G T C G T A C G T A A T G C C G T A C T G A C G T A A C T G A G T C C G T A C T A G G T C A A G C T T A C G
Reverse Opposite:
A G T C T C G A A C G T A G T C G A C T C T A G A G T C C G A T A G C T A C G T A T C G A C G T A C G T G T C A G T C A A C G T
p-value:1e-8
log p-value:-2.058e+01
Information Content per bp:1.776
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.45%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.4 +/- 29.3bp
Average Position of motif in Background74.6 +/- 5.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0061.1_Sox11_1/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--ATTAACAAAGCDGATV
ATAAGAACAAAGGACTA-
 A C G T A C G T C G T A A C G T A C G T C G T A C G T A A T G C C G T A C T G A C G T A A C T G A G T C C G T A C T A G G T C A A G C T T A C G
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T

SOX10/MA0442.1/Jaspar

Match Rank:2
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:ATTAACAAAGCDGATV
----ACAAAG------
 C G T A A C G T A C G T C G T A C G T A A T G C C G T A C T G A C G T A A C T G A G T C C G T A C T A G G T C A A G C T T A C G
A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ATTAACAAAGCDGATV
AGAAGAACAAAGGACTA-
 A C G T A C G T C G T A A C G T A C G T C G T A C G T A A T G C C G T A C T G A C G T A A C T G A G T C C G T A C T A G G T C A A G C T T A C G
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:ATTAACAAAGCDGATV
-GGAACAAAGR-----
 C G T A A C G T A C G T C G T A C G T A A T G C C G T A C T G A C G T A A C T G A G T C C G T A C T A G G T C A A G C T T A C G
A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:ATTAACAAAGCDGATV
-VRRACAAWGG-----
 C G T A A C G T A C G T C G T A C G T A A T G C C G T A C T G A C G T A A C T G A G T C C G T A C T A G G T C A A G C T T A C G
A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

PB0129.1_Glis2_2/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---ATTAACAAAGCDGATV
AATATTAATAAAGA-----
 A C G T A C G T A C G T C G T A A C G T A C G T C G T A C G T A A T G C C G T A C T G A C G T A A C T G A G T C C G T A C T A G G T C A A G C T T A C G
G C T A C G T A A C G T C T G A C G A T C A G T C T G A G C T A G C A T G C T A C G T A G T C A C T A G T C G A A C G T A C G T A C G T A C G T A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---ATTAACAAAGCDGATV
AAAAATAACAAACGG----
 A C G T A C G T A C G T C G T A A C G T A C G T C G T A C G T A A T G C C G T A C T G A C G T A A C T G A G T C C G T A C T A G G T C A A G C T T A C G
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G A C G T A C G T A C G T A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:8
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:ATTAACAAAGCDGATV
---AACAAT-------
 C G T A A C G T A C G T C G T A C G T A A T G C C G T A C T G A C G T A A C T G A G T C C G T A C T A G G T C A A G C T T A C G
A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Foxj2/MA0614.1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ATTAACAAAGCDGATV
GTAAACAA--------
 C G T A A C G T A C G T C G T A C G T A A T G C C G T A C T G A C G T A A C T G A G T C C G T A C T A G G T C A A G C T T A C G
C T A G G C A T G T C A C G T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SRY/MA0084.1/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ATTAACAAAGCDGATV
GTAAACAAT-------
 C G T A A C G T A C G T C G T A C G T A A T G C C G T A C T G A C G T A A C T G A G T C C G T A C T A G G T C A A G C T T A C G
A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T