Information for 2-CATGAACTGTATCATT (Motif 3)

A G T C G C T A A C G T A C T G C T G A G T C A A T G C A C G T C T A G A G C T T C G A G A C T A G T C C G T A A C G T C G A T
Reverse Opposite:
C G T A C G T A C G A T A C T G C G T A A C G T C T G A A G T C C G T A A T C G C A G T A G C T T A G C C G T A C G A T C T A G
p-value:1e-12
log p-value:-2.795e+01
Information Content per bp:1.724
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.73%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.5 +/- 21.9bp
Average Position of motif in Background39.8 +/- 16.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

DMRT3/MA0610.1/Jaspar

Match Rank:1
Score:0.57
Offset:5
Orientation:forward strand
Alignment:CATGAACTGTATCATT
-----AATGTATCAAT
 A G T C G C T A A C G T A C T G C T G A G T C A A T G C A C G T C T A G A G C T T C G A G A C T A G T C C G T A A C G T C G A T
A C G T A C G T A C G T A C G T A C G T G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

FOS/MA0476.1/Jaspar

Match Rank:2
Score:0.53
Offset:5
Orientation:forward strand
Alignment:CATGAACTGTATCATT
-----TGTGACTCATT
 A G T C G C T A A C G T A C T G C T G A G T C A A T G C A C G T C T A G A G C T T C G A G A C T A G T C C G T A A C G T C G A T
A C G T A C G T A C G T A C G T A C G T C A G T T A C G A C G T A C T G C G T A A T G C A C G T A G T C C G T A A G C T A G C T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:3
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CATGAACTGTATCATT
--TGACCTTTGACCTC
 A G T C G C T A A C G T A C T G C T G A G T C A A T G C A C G T C T A G A G C T T C G A G A C T A G T C C G T A A C G T C G A T
A C G T A C G T G A C T T A C G T G C A G T A C G A T C A G C T G A C T G A C T T A C G T G C A G T A C G A T C G A C T A G T C

BATF::JUN/MA0462.1/Jaspar

Match Rank:4
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:CATGAACTGTATCATT--
-------TGAGTCATTTC
 A G T C G C T A A C G T A C T G C T G A G T C A A T G C A C G T C T A G A G C T T C G A G A C T A G T C C G T A A C G T C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G C G T A A T C G A C G T G T A C C G T A C A G T G C A T G A C T G A T C

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CATGAACTGTATCATT
--TGACCTTTGCCCTA
 A G T C G C T A A C G T A C T G C T G A G T C A A T G C A C G T C T A G A G C T T C G A G A C T A G T C C G T A A C G T C G A T
A C G T A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:6
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CATGAACTGTATCATT-
GTTGACCTTTGACCTTT
 A G T C G C T A A C G T A C T G C T G A G T C A A T G C A C G T C T A G A G C T T C G A G A C T A G T C C G T A A C G T C G A T A C G T
T A C G G A C T A C G T A C T G C G T A A G T C A G T C A C G T C G A T A C G T A C T G C G T A G T A C A G T C A G C T G A C T C A G T

Nr2f6/MA0677.1/Jaspar

Match Rank:7
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CATGAACTGTATCATT
--TGACCTTTGACCTN
 A G T C G C T A A C G T A C T G C T G A G T C A A T G C A C G T C T A G A G C T T C G A G A C T A G T C C G T A A C G T C G A T
A C G T A C G T A G C T T C A G T G C A G T A C G T A C A G C T G A C T G A C T T C A G T G C A G T A C G T A C A G C T A G T C

Sox1/MA0870.1/Jaspar

Match Rank:8
Score:0.51
Offset:4
Orientation:forward strand
Alignment:CATGAACTGTATCATT---
----AACAATAACATTGTT
 A G T C G C T A A C G T A C T G C T G A G T C A A T G C A C G T C T A G A G C T T C G A G A C T A G T C C G T A A C G T C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A G C T A A G T C G T C A G T C A C G A T C G T A T C G A A T G C C G T A A C G T A G C T A C T G G A C T A G C T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CATGAACTGTATCATT-
--TGACCTTTGCCCTAN
 A G T C G C T A A C G T A C T G C T G A G T C A A T G C A C G T C T A G A G C T T C G A G A C T A G T C C G T A A C G T C G A T A C G T
A C G T A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

FOSL2/MA0478.1/Jaspar

Match Rank:10
Score:0.49
Offset:6
Orientation:reverse strand
Alignment:CATGAACTGTATCATT-
------NTGAGTCATCN
 A G T C G C T A A C G T A C T G C T G A G T C A A T G C A C G T C T A G A G C T T C G A G A C T A G T C C G T A A C G T C G A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A A C G T A C T G C G T A T A C G A G C T A G T C C G T A G A C T A G T C T G A C