Information for 5-TARATTGTMYTKG (Motif 11)

A C G T C G T A C T G A C G T A A C G T A C G T A C T G A C G T G T C A A G T C A G C T A C G T A C T G
Reverse Opposite:
A G T C G T C A C T G A C T A G C A G T C G T A A G T C C G T A C G T A A C G T A G C T A C G T C G T A
p-value:1e-8
log p-value:-2.018e+01
Information Content per bp:1.874
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets33.0 +/- 23.9bp
Average Position of motif in Background10.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0165.1_Sox11_2/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TARATTGTMYTKG-
AAAATTGTTATGAA
 A C G T C G T A C T G A C G T A A C G T A C G T A C T G A C G T G T C A A G T C A G C T A C G T A C T G A C G T
C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A

PB0175.1_Sox4_2/Jaspar

Match Rank:2
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TARATTGTMYTKG-
GGAAAAATTGTTAGGAA
 A C G T A C G T A C G T A C G T C G T A C T G A C G T A A C G T A C G T A C T G A C G T G T C A A G T C A G C T A C G T A C T G A C G T
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

PB0063.1_Sox13_1/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TARATTGTMYTKG-
AANTTATTGTTCTNNA
 A C G T A C G T A C G T C G T A C T G A C G T A A C G T A C G T A C T G A C G T G T C A A G T C A G C T A C G T A C T G A C G T
C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A

PB0066.1_Sox17_1/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TARATTGTMYTKG
NNATNAATTGTTTNN-
 A C G T A C G T A C G T A C G T C G T A C T G A C G T A A C G T A C G T A C T G A C G T G T C A A G T C A G C T A C G T A C T G
G C A T C T A G C G A T C G A T A G C T G C T A C G T A G C A T C G A T T C A G C G A T A C G T G A C T G C T A A C G T A C G T

PB0074.1_Sox8_1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TARATTGTMYTKG-
GTATCTATTGTTCTTTA
 A C G T A C G T A C G T A C G T C G T A C T G A C G T A A C G T A C G T A C T G A C G T G T C A A G T C A G C T A C G T A C T G A C G T
C A G T C A G T C G T A C G A T A G C T G C A T C G T A G A C T C G A T T C A G C G A T G A C T G T A C G C A T C A G T C G A T C G T A

PB0072.1_Sox5_1/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TARATTGTMYTKG-
NNTTTATTGTTCTNNN
 A C G T A C G T A C G T C G T A C T G A C G T A A C G T A C G T A C T G A C G T G T C A A G T C A G C T A C G T A C T G A C G T
G C T A C G A T G C A T G A C T G C A T C G T A G A C T G C A T C T A G G A C T A G C T G A T C G A C T G C T A C G T A G C T A

Sox17/MA0078.1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TARATTGTMYTKG
CTCATTGTC----
 A C G T C G T A C T G A C G T A A C G T A C G T A C T G A C G T G T C A A G T C A G C T A C G T A C T G
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A C G T A C G T

PB0067.1_Sox18_1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TARATTGTMYTKG--
TTCAATTGTTCTAAAA
 A C G T A C G T C G T A C T G A C G T A A C G T A C G T A C T G A C G T G T C A A G T C A G C T A C G T A C T G A C G T A C G T
A G C T G C A T A G T C G T C A C G T A C G A T C G A T T C A G C G A T G C A T A G T C G C A T G T C A C G T A G T C A G C T A

PB0173.1_Sox21_2/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TARATTGTMYTKG--
AATCAATTGTTCCGCTA
 A C G T A C G T A C G T C G T A C T G A C G T A A C G T A C G T A C T G A C G T G T C A A G T C A G C T A C G T A C T G A C G T A C G T
T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A

MF0011.1_HMG_class/Jaspar

Match Rank:10
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TARATTGTMYTKG
---ATTGTT----
 A C G T C G T A C T G A C G T A A C G T A C G T A C T G A C G T G T C A A G T C A G C T A C G T A C T G
A C G T A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T A C G T A C G T