Information for 20-TTAGTATGCA (Motif 46)

A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C C G T A A C G T C G T A A G T C A C G T C G T A C G T A
p-value:1e-3
log p-value:-6.985e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif4.76%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets29.0 +/- 0.0bp
Average Position of motif in Background60.1 +/- 22.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0148.1_Pou3f3/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TTAGTATGCA------
TNNATTATGCATANNTT
 A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TTAGTATGCA---
CCATTGTATGCAAAT
 A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TTAGTATGCA---
CTTTGTTATGCAAAT
 A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

Pou2f3/MA0627.1/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TTAGTATGCA-------
-TTGTATGCAAATTAGA
 A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TTAGTATGCA-------
-TTGTATGCAAATTAGA
 A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TTAGTATGCA---
CATTGTTATGCAAAT
 A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

POU4F2/MA0683.1/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----TTAGTATGCA-
CTCATTAATTATGCAT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C T G A G T C C G T A A C G T
A G T C G A C T T G A C T G C A A G C T G A C T C G T A C G T A C G A T G C A T C G T A C G A T C A T G G A T C C T G A G A C T

PH0144.1_Pou2f2/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TTAGTATGCA-------
-TTGTATGCAAATTAGA
 A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

POU2F1/MA0785.1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TTAGTATGCA----
--AATATGCAAATT
 A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TTAGTATGCA-
-GHATATKCAT
 A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C T G A G T C C G T A A C G T
A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T