Information for 17-YCATARCTKWGTK (Motif 29)

A G T C A G T C C G T A A C G T C G T A C T G A G T A C A C G T C A G T C G T A A C T G A C G T A C G T
Reverse Opposite:
G T C A C G T A A G T C C G A T G T A C C G T A A C T G A G C T A C G T C G T A A C G T A C T G C T A G
p-value:1e-5
log p-value:-1.251e+01
Information Content per bp:1.842
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif9.52%
Number of Background Sequences with motif6.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.3 +/- 34.6bp
Average Position of motif in Background72.4 +/- 13.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0176.1_Sox5_2/Jaspar

Match Rank:1
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--YCATARCTKWGTK
TATCATAATTAAGGA
 A C G T A C G T A G T C A G T C C G T A A C G T C G T A C T G A G T A C A C G T C A G T C G T A A C T G A C G T A C G T
C G A T G C T A C G A T A G T C C T G A C A G T T G C A G C T A G C A T G A C T C G T A T G C A T A C G C A T G C G T A

Sox1/MA0870.1/Jaspar

Match Rank:2
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--YCATARCTKWGTK
AACAATAACATTGTT
 A C G T A C G T A G T C A G T C C G T A A C G T C G T A C T G A G T A C A C G T C A G T C G T A A C T G A C G T A C G T
T G C A G C T A A G T C G T C A G T C A C G A T C G T A T C G A A T G C C G T A A C G T A G C T A C T G G A C T A G C T

SOX10/MA0442.1/Jaspar

Match Rank:3
Score:0.55
Offset:6
Orientation:forward strand
Alignment:YCATARCTKWGTK
------CTTTGT-
 A G T C A G T C C G T A A C G T C G T A C T G A G T A C A C G T C A G T C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--YCATARCTKWGTK
GGCCATAAATCA---
 A C G T A C G T A G T C A G T C C G T A A C G T C G T A C T G A G T A C A C G T C A G T C G T A A C T G A C G T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-YCATARCTKWGTK
GCCATAAATCA---
 A C G T A G T C A G T C C G T A A C G T C G T A C T G A G T A C A C G T C A G T C G T A A C T G A C G T A C G T
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:6
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--YCATARCTKWGTK
GGCCATAAATCA---
 A C G T A C G T A G T C A G T C C G T A A C G T C G T A C T G A G T A C A C G T C A G T C G T A A C T G A C G T A C G T
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.52
Offset:5
Orientation:forward strand
Alignment:YCATARCTKWGTK--
-----YCTTTGTTCC
 A G T C A G T C C G T A A C G T C G T A C T G A G T A C A C G T C A G T C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

Gata1/MA0035.3/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-YCATARCTKWGTK
TTCTTATCTGT---
 A C G T A G T C A G T C C G T A A C G T C G T A C T G A G T A C A C G T C A G T C G T A A C T G A C G T A C G T
A G C T A G C T A G T C A G C T A C G T C G T A A C G T A G T C C G A T A T C G G A C T A C G T A C G T A C G T

PB0126.1_Gata5_2/Jaspar

Match Rank:9
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----YCATARCTKWGTK
NNNCTGATATCTCNNNN
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T C G T A C T G A G T A C A C G T C A G T C G T A A C T G A C G T A C G T
T G C A T G A C C T G A G A T C G C A T C T A G G T C A C A G T G T C A A C G T G T A C C A G T G A T C C A G T T A C G A C G T A G T C

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.52
Offset:5
Orientation:forward strand
Alignment:YCATARCTKWGTK--
-----CCWTTGTYYB
 A G T C A G T C C G T A A C G T C G T A C T G A G T A C A C G T C A G T C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G