Information for 4-TWMTAYYTGTKAM (Motif 12)

A G C T C G A T T G A C A C G T C G T A A G T C A G C T C G A T A C T G A C G T A C T G C G T A G T A C
Reverse Opposite:
A C G T C G A T G T A C C G T A A G T C C G T A C T G A C T A G A C G T C G T A A C T G C G T A C T G A
p-value:1e-7
log p-value:-1.617e+01
Information Content per bp:1.812
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif19.05%
Number of Background Sequences with motif91.5
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets71.2 +/- 19.2bp
Average Position of motif in Background54.2 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0172.1_Sox1_2/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TWMTAYYTGTKAM--
CTATAATTGTTAGCG
 A G C T C G A T T G A C A C G T C G T A A G T C A G C T C G A T A C T G A C G T A C T G C G T A G T A C A C G T A C G T
G T A C A G C T C T G A G A C T G C T A C T G A G A C T A G C T T A C G A C G T A C G T T G C A A C G T A G T C T A C G

PH0104.1_Meis2/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TWMTAYYTGTKAM---
AAAGACCTGTCAATAC
 A G C T C G A T T G A C A C G T C G T A A G T C A G C T C G A T A C T G A C G T A C T G C G T A G T A C A C G T A C G T A C G T
G C T A C G T A T C A G A T C G C T G A A T G C G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T G T C A A G T C

PH0105.1_Meis3/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TWMTAYYTGTKAM---
AATTACCTGTCAATAC
 A G C T C G A T T G A C A C G T C G T A A G T C A G C T C G A T A C T G A C G T A C T G C G T A G T A C A C G T A C G T A C G T
C G T A C T G A C G A T A C G T C T G A A T G C G A T C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G C A G T A C

PH0102.1_Meis1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TWMTAYYTGTKAM---
AACGAGCTGTCAATAC
 A G C T C G A T T G A C A C G T C G T A A G T C A G C T C G A T A C T G A C G T A C T G C G T A G T A C A C G T A C G T A C G T
C G T A C G T A T A C G A T C G C T G A A T C G T G A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A G A T C

PH0085.1_Irx4/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TWMTAYYTGTKAM---
AATATACATGTAAAACA
 A C G T A G C T C G A T T G A C A C G T C G T A A G T C A G C T C G A T A C T G A C G T A C T G C G T A G T A C A C G T A C G T A C G T
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TWMTAYYTGTKAM
---AAGGTGTKAA
 A G C T C G A T T G A C A C G T C G T A A G T C A G C T C G A T A C T G A C G T A C T G C G T A G T A C
A C G T A C G T A C G T C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:7
Score:0.61
Offset:4
Orientation:forward strand
Alignment:TWMTAYYTGTKAM-
----AGGTGTGAAM
 A G C T C G A T T G A C A C G T C G T A A G T C A G C T C G A T A C T G A C G T A C T G C G T A G T A C A C G T
A C G T A C G T A C G T A C G T C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A

PH0086.1_Irx5/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TWMTAYYTGTKAM--
ANTNNTACATGTANNTN
 A C G T A C G T A G C T C G A T T G A C A C G T C G T A A G T C A G C T C G A T A C T G A C G T A C T G C G T A G T A C A C G T A C G T
G C T A G T C A G C A T G C A T C A G T C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A C G A T G C T A G C A T G C A T

TBX20/MA0689.1/Jaspar

Match Rank:9
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TWMTAYYTGTKAM-
---TAGGTGTGAAG
 A G C T C G A T T G A C A C G T C G T A A G T C A G C T C G A T A C T G A C G T A C T G C G T A G T A C A C G T
A C G T A C G T A C G T C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G

PH0140.1_Pknox1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TWMTAYYTGTKAM---
AAAGACCTGTCAATCC
 A G C T C G A T T G A C A C G T C G T A A G T C A G C T C G A T A C T G A C G T A C T G C G T A G T A C A C G T A C G T A C G T
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C