Information for 2-AGAGTGTGBTGTGTGH (Motif 2)

C T G A C T A G C T G A A C T G C G A T A C T G A C G T A T C G A G T C A G C T A C T G A C G T A C T G A C G T A C T G G A C T
Reverse Opposite:
C G T A A G T C C G T A A G T C C G T A A G T C C T G A T C A G A T G C G T C A A G T C C G T A A G T C A G C T G A T C A G C T
p-value:1e-10
log p-value:-2.399e+01
Information Content per bp:1.801
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif8.89%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.8 +/- 30.3bp
Average Position of motif in Background65.5 +/- 33.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MTF1/MA0863.1/Jaspar

Match Rank:1
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:AGAGTGTGBTGTGTGH---
-----GTGCCGTGTGCAAA
 C T G A C T A G C T G A A C T G C G A T A C T G A C G T A T C G A G T C A G C T A C T G A C G T A C T G A C G T A C T G G A C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G A C G T C T A G G T A C G A T C A C T G A C G T A C T G G A C T A C T G A G T C C G T A T G C A G T C A

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:AGAGTGTGBTGTGTGH----
----NNGCGTGTGTGCNGCN
 C T G A C T A G C T G A A C T G C G A T A C T G A C G T A T C G A G T C A G C T A C T G A C G T A C T G A C G T A C T G G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

PB0208.1_Zscan4_2/Jaspar

Match Rank:3
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AGAGTGTGBTGTGTGH----
----NNNNTTGTGTGCTTNN
 C T G A C T A G C T G A A C T G C G A T A C T G A C G T A T C G A G T C A G C T A C T G A C G T A C T G A C G T A C T G G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

PB0044.1_Mtf1_1/Jaspar

Match Rank:4
Score:0.57
Offset:5
Orientation:forward strand
Alignment:AGAGTGTGBTGTGTGH-----
-----GGGCCGTGTGCAAAAA
 C T G A C T A G C T G A A C T G C G A T A C T G A C G T A T C G A G T C A G C T A C T G A C G T A C T G A C G T A C T G G A C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G A C T G C T A G G A T C G T A C C A T G C A G T A C T G G A C T C A T G G T A C C G T A T G C A G T C A C T G A G C A T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AGAGTGTGBTGTGTGH
--AGGVNCCTTTGT--
 C T G A C T A G C T G A A C T G C G A T A C T G A C G T A T C G A G T C A G C T A C T G A C G T A C T G A C G T A C T G G A C T
A C G T A C G T C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T

KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.54
Offset:4
Orientation:forward strand
Alignment:AGAGTGTGBTGTGTGH
----GGGGGTGTGTCC
 C T G A C T A G C T G A A C T G C G A T A C T G A C G T A T C G A G T C A G C T A C T G A C G T A C T G A C G T A C T G G A C T
A C G T A C G T A C G T A C G T T C A G C A T G C A T G A C T G A C T G A G C T A C T G A C G T A C T G C A G T A T G C A G T C

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:7
Score:0.54
Offset:9
Orientation:forward strand
Alignment:AGAGTGTGBTGTGTGH
---------TGCGTG-
 C T G A C T A G C T G A A C T G C G A T A C T G A C G T A T C G A G T C A G C T A C T G A C G T A C T G A C G T A C T G G A C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AGAGTGTGBTGTGTGH
TTGAGTGSTT-------
 A C G T C T G A C T A G C T G A A C T G C G A T A C T G A C G T A T C G A G T C A G C T A C T G A C G T A C T G A C G T A C T G G A C T
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MGA/MA0801.1/Jaspar

Match Rank:9
Score:0.52
Offset:8
Orientation:forward strand
Alignment:AGAGTGTGBTGTGTGH
--------AGGTGTGA
 C T G A C T A G C T G A A C T G C G A T A C T G A C G T A T C G A G T C A G C T A C T G A C G T A C T G A C G T A C T G G A C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:10
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-AGAGTGTGBTGTGTGH
TTRAGTGSYK-------
 A C G T C T G A C T A G C T G A A C T G C G A T A C T G A C G T A T C G A G T C A G C T A C T G A C G T A C T G A C G T A C T G G A C T
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T