Information for 10-GAAGGACAGCSAG (Motif 25)

C T A G C G T A C T G A A C T G A C T G T C G A T A G C C T G A C T A G A T G C T A C G C G T A A C T G
Reverse Opposite:
A G T C C G A T A T G C A T C G A G T C A G C T A C T G A C G T A G T C G T A C A G C T G A C T A G T C
p-value:1e-7
log p-value:-1.682e+01
Information Content per bp:1.704
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif3.90%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets34.8 +/- 8.6bp
Average Position of motif in Background41.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GAAGGACAGCSAG
NTGATTGACAGN---
 A C G T A C G T C T A G C G T A C T G A A C T G A C T G T C G A T A G C C T G A C T A G A T G C T A C G C G T A A C T G
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GAAGGACAGCSAG
TGAGTGACAGSC--
 A C G T C T A G C G T A C T G A A C T G A C T G T C G A T A G C C T G A C T A G A T G C T A C G C G T A A C T G
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GAAGGACAGCSAG
BTGABTGACAGS---
 A C G T A C G T C T A G C G T A C T G A A C T G A C T G T C G A T A G C C T G A C T A G A T G C T A C G C G T A A C T G
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:4
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GAAGGACAGCSAG
--TTGACAGC---
 C T A G C G T A C T G A A C T G A C T G T C G A T A G C C T G A C T A G A T G C T A C G C G T A A C T G
A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:5
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GAAGGACAGCSAG---
-VAGRACAKNCTGTBC
 C T A G C G T A C T G A A C T G A C T G T C G A T A G C C T G A C T A G A T G C T A C G C G T A A C T G A C G T A C G T A C G T
A C G T T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAAGGACAGCSAG-------
NGAGGTCANNGAGTTCANNN
 C T A G C G T A C T G A A C T G A C T G T C G A T A G C C T G A C T A G A T G C T A C G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GAAGGACAGCSAG----
-NAGAACAGNCTGTNCT
 C T A G C G T A C T G A A C T G A C T G T C G A T A G C C T G A C T A G A T G C T A C G C G T A A C T G A C G T A C G T A C G T A C G T
A C G T T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T

PH0169.1_Tgif1/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GAAGGACAGCSAG--
GATATTGACAGCTGCGT
 A C G T A C G T C T A G C G T A C T G A A C T G A C T G T C G A T A G C C T G A C T A G A T G C T A C G C G T A A C T G A C G T A C G T
C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T

ESR2/MA0258.2/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GAAGGACAGCSAG----
--AGGTCACCCTGACCT
 C T A G C G T A C T G A A C T G A C T G T C G A T A G C C T G A C T A G A T G C T A C G C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GAAGGACAGCSAG
----CACAGN---
 C T A G C G T A C T G A A C T G A C T G T C G A T A G C C T G A C T A G A T G C T A C G C G T A A C T G
A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T