Information for 4-CAGACATGCAGGAAGA (Motif 9)

A G T C G T C A A C T G C T G A A G T C C G T A A C G T A C T G A G T C C G T A A C T G C T A G G T C A C G T A A C T G C T G A
Reverse Opposite:
A G C T A G T C A C G T A C G T A G T C A G T C A C G T A C T G A G T C G T C A A C G T A C T G A G C T A G T C A C G T A C T G
p-value:1e-6
log p-value:-1.403e+01
Information Content per bp:1.941
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif3.33%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.5 +/- 18.5bp
Average Position of motif in Background22.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CAGACATGCAGGAAGA
SCAGYCADGCATGAC--
 A C G T A G T C G T C A A C T G C T G A A G T C C G T A A C G T A C T G A G T C C G T A A C T G C T A G G T C A C G T A A C T G C T G A
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T A C G T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:2
Score:0.59
Offset:7
Orientation:forward strand
Alignment:CAGACATGCAGGAAGA-
-------ACAGGAAGTG
 A G T C G T C A A C T G C T G A A G T C C G T A A C G T A C T G A G T C C G T A A C T G C T A G G T C A C G T A A C T G C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CAGACATGCAGGAAGA
GCAGCCAAGCGTGACN-
 A C G T A G T C G T C A A C T G C T G A A G T C C G T A A C G T A C T G A G T C C G T A A C T G C T A G G T C A C G T A A C T G C T G A
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C A C G T

ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer

Match Rank:4
Score:0.57
Offset:7
Orientation:forward strand
Alignment:CAGACATGCAGGAAGA-
-------ACAGGAAGTG
 A G T C G T C A A C T G C T G A A G T C C G T A A C G T A C T G A G T C C G T A A C T G C T A G G T C A C G T A A C T G C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C T G C A A C T G A C T G C G T A C G T A C T A G G A C T T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CAGACATGCAGGAAGA
CCAGACRSVB-------
 A C G T A G T C G T C A A C T G C T G A A G T C C G T A A C G T A C T G A G T C C G T A A C T G C T A G G T C A C G T A A C T G C T G A
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer

Match Rank:6
Score:0.55
Offset:6
Orientation:forward strand
Alignment:CAGACATGCAGGAAGA
------AVCAGGAAGT
 A G T C G T C A A C T G C T G A A G T C C G T A A C G T A C T G A G T C C G T A A C T G C T A G G T C A C G T A A C T G C T G A
A C G T A C G T A C G T A C G T A C G T A C G T C G T A T A G C T A G C T G C A A C T G C T A G C G T A C G T A T C A G G A C T

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:7
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:CAGACATGCAGGAAGA--
------NDCAGGAARTNN
 A G T C G T C A A C T G C T G A A G T C C G T A A C G T A C T G A G T C C G T A A C T G C T A G G T C A C G T A A C T G C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C T G A T A G C G T C A A C T G A C T G C G T A G C T A T C A G G A C T T C A G T A C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CAGACATGCAGGAAGA
CCAGACAG---------
 A C G T A G T C G T C A A C T G C T G A A G T C C G T A A C G T A C T G A G T C C G T A A C T G C T A G G T C A C G T A A C T G C T G A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MF0001.1_ETS_class/Jaspar

Match Rank:9
Score:0.54
Offset:7
Orientation:forward strand
Alignment:CAGACATGCAGGAAGA
-------ACCGGAAG-
 A G T C G T C A A C T G C T G A A G T C C G T A A C G T A C T G A G T C C G T A A C T G C T A G G T C A C G T A A C T G C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T A G C T G A C C A T G C T A G C T G A G C T A T C A G A C G T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:10
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------CAGACATGCAGGAAGA
NGTGTTCAVTSAAGCGKAAA--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T C A A C T G C T G A A G T C C G T A A C G T A C T G A G T C C G T A A C T G C T A G G T C A C G T A A C T G C T G A
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A A C G T A C G T