Information for 5-TCCTGACCTGACT (Motif 7)

A G C T A G T C A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T G T A C C G T A A C T G A C T G A C G T A G T C C G T A C T A G A C T G C T G A
p-value:1e-6
log p-value:-1.403e+01
Information Content per bp:1.924
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif3.33%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.2 +/- 25.1bp
Average Position of motif in Background35.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:TCCTGACCTGACT
---TGACCTYA--
 A G C T A G T C A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C G T A A G T C A C G T
A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:TCCTGACCTGACT
---TGACCT----
 A G C T A G T C A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C G T A A G T C A C G T
A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:TCCTGACCTGACT
---TGACCTTGAT
 A G C T A G T C A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C G T A A G T C A C G T
A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TCCTGACCTGACT
---TGACCTARTT
 A G C T A G T C A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C G T A A G T C A C G T
A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TCCTGACCTGACT
--GTGACCTT---
 A G C T A G T C A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C G T A A G T C A C G T
A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TCCTGACCTGACT--
NNCNTGACCCCGCTCT
 A C G T A G C T A G T C A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C G T A A G T C A C G T A C G T A C G T
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:7
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TCCTGACCTGACT
TGACCTTGACCT----
 A C G T A C G T A C G T A G C T A G T C A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C G T A A G T C A C G T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TCCTGACCTGACT---
--TTGACCTANTTATN
 A G C T A G T C A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

CRE(bZIP)/Promoter/Homer

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TCCTGACCTGACT
CGGTGACGTCAC-
 A G C T A G T C A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C G T A A G T C A C G T
A T G C A T C G T A C G A G C T A T C G C T G A A G T C C T A G A G C T A T G C C T G A A T G C A C G T

ZEB1/MA0103.2/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TCCTGACCTGACT
-CCTCACCTG---
 A G C T A G T C A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C G T A A G T C A C G T
A C G T T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T A C G T A C G T