Information for 4-AAGTAGTGGC (Motif 28)

C G T A C G T A A C T G A C G T C G T A C T A G A C G T A C T G A C T G G T A C
Reverse Opposite:
A C T G G T A C A G T C C G T A A G T C A C G T C G T A A G T C A C G T A C G T
p-value:1e-9
log p-value:-2.242e+01
Information Content per bp:1.926
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.31%
Number of Background Sequences with motif32.8
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets46.9 +/- 22.2bp
Average Position of motif in Background46.7 +/- 32.9bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0039.1_Mnx1/Jaspar

Match Rank:1
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----AAGTAGTGGC-
GTACTAATTAGTGGCG
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A C G T C G T A C T A G A C G T A C T G A C T G G T A C A C G T
A C T G A C G T T G C A A T G C G A C T G T C A C G T A G A C T A C G T C T G A A T C G A C G T C T A G T A C G G A T C T A C G

PH0027.1_Emx2/Jaspar

Match Rank:2
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------AAGTAGTGGC-
ACCACTAATTAGTGGAC
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A C G T C G T A C T A G A C G T A C T G A C T G G T A C A C G T
G C T A T A G C T G A C T C G A A G T C G A C T G T C A G C T A C A G T A C G T C T G A T C A G A G C T A C T G T A C G G C T A A G T C

HOXA5/MA0158.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AAGTAGTGGC
AATTAGTG--
 C G T A C G T A A C T G A C G T C G T A C T A G A C G T A C T G A C T G G T A C
T G C A C G T A A G C T C G A T G C T A T A C G G A C T A C T G A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AAGTAGTGGC
TTAAGTGGT---
 A C G T A C G T C G T A C G T A A C T G A C G T C G T A C T A G A C G T A C T G A C T G G T A C
G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T A C G T A C G T

PH0029.1_En2/Jaspar

Match Rank:5
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------AAGTAGTGGC-
TGCACTAATTAGTGGAA
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A C G T C G T A C T A G A C G T A C T G A C T G G T A C A C G T
C G A T T C A G G T A C T G C A G A T C G A C T G C T A C G T A C G A T C A G T C T G A C T A G A G C T A T C G T C A G G C T A G C A T

PH0033.1_Gbx1/Jaspar

Match Rank:6
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------AAGTAGTGGC-
TNCACTAATTAGTNNNN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A C G T C G T A C T A G A C G T A C T G A C T G G T A C A C G T
C G A T T G C A T G A C T G C A G T A C G A C T G T C A C T G A A G C T A C G T C T G A A C T G A G C T A C T G T A C G G A T C C G T A

PB0180.1_Sp4_2/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AAGTAGTGGC---
CAAAGGCGTGGCCAG
 A C G T A C G T C G T A C G T A A C T G A C G T C G T A C T A G A C G T A C T G A C T G G T A C A C G T A C G T A C G T
A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G

PH0106.1_Msx1/Jaspar

Match Rank:8
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----AAGTAGTGGC-
NNATTAATTAGTNGNN
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A C G T C G T A C T A G A C G T A C T G A C T G G T A C A C G T
C A T G C G T A T G C A G A C T G A C T C G T A C G T A A C G T A C G T C T G A C T A G G A C T C G A T C A T G A G T C T G C A

NKX3-2/MA0122.2/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AAGTAGTGGC
TTAAGTGGN---
 A C G T A C G T C G T A C G T A A C T G A C G T C G T A C T A G A C G T A C T G A C T G G T A C
G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AAGTAGTGGC
NTCAAGTGGN---
 A C G T A C G T A C G T C G T A C G T A A C T G A C G T C G T A C T A G A C G T A C T G A C T G G T A C
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T A C G T