Information for 6-GCCCAGGTACACT (Motif 9)

C T A G A G T C A G T C A T G C C G T A C T A G C T A G A C G T C G T A A G T C C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T A C T G A C G T C G T A A G T C A G T C C G A T T A C G C T A G A C T G A G T C
p-value:1e-6
log p-value:-1.529e+01
Information Content per bp:1.839
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif8.70%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets78.7 +/- 21.0bp
Average Position of motif in Background44.2 +/- 5.3bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GCCCAGGTACACT
--CCAGGAACAG-
 C T A G A G T C A G T C A T G C C G T A C T A G C T A G A C G T C G T A A G T C C G T A A G T C A C G T
A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GCCCAGGTACACT
--NTTGATACATT
 C T A G A G T C A G T C A T G C C G T A C T A G C T A G A C G T C G T A A G T C C G T A A G T C A C G T
A C G T A C G T C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:GCCCAGGTACACT---
------MRSCACTYAA
 C T A G A G T C A G T C A T G C C G T A C T A G C T A G A C G T C G T A A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

NKX2-8/MA0673.1/Jaspar

Match Rank:4
Score:0.55
Offset:8
Orientation:forward strand
Alignment:GCCCAGGTACACT----
--------CCACTTGAA
 C T A G A G T C A G T C A T G C C G T A C T A G C T A G A C G T C G T A A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.54
Offset:6
Orientation:forward strand
Alignment:GCCCAGGTACACT---
------AASCACTCAA
 C T A G A G T C A G T C A T G C C G T A C T A G C T A G A C G T C G T A A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

PB0200.1_Zfp187_2/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GCCCAGGTACACT-
GAGCCCTTGTCCCTAA
 A C G T A C G T C T A G A G T C A G T C A T G C C G T A C T A G C T A G A C G T C G T A A G T C C G T A A G T C A C G T A C G T
A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G

PB0159.1_Rfx4_2/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GCCCAGGTACACT
TACCCTAGTTACCGA
 A C G T A C G T C T A G A G T C A G T C A T G C C G T A C T A G C T A G A C G T C G T A A G T C C G T A A G T C A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

PB0208.1_Zscan4_2/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GCCCAGGTACACT-----
--CGAAGCACACAAAATA
 C T A G A G T C A G T C A T G C C G T A C T A G C T A G A C G T C G T A A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GCCCAGGTACACT---
ACTCCAAGTACTTGGAA
 A C G T C T A G A G T C A G T C A T G C C G T A C T A G C T A G A C G T C G T A A G T C C G T A A G T C A C G T A C G T A C G T A C G T
T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:GCCCAGGTACACT--
---SSAATCCACANN
 C T A G A G T C A G T C A T G C C G T A C T A G C T A G A C G T C G T A A G T C C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C