Information for 1-CATCCACACAMGTGTC (Motif 3)

G A T C C G T A A C G T A T G C A T G C G T C A G T A C C G T A A T G C T G C A G T A C A T C G A C G T C T A G A C G T A G T C
Reverse Opposite:
T A C G C G T A A G T C G T C A A T G C A C T G A C G T A T C G A C G T A C T G A C G T A T C G A T C G T G C A G A C T C T A G
p-value:1e-8
log p-value:-2.002e+01
Information Content per bp:1.686
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif17.39%
Number of Background Sequences with motif23.2
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets53.2 +/- 29.0bp
Average Position of motif in Background50.3 +/- 50.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CLOCK/MA0819.1/Jaspar

Match Rank:1
Score:0.65
Offset:6
Orientation:forward strand
Alignment:CATCCACACAMGTGTC
------AACACGTGTT
 G A T C C G T A A C G T A T G C A T G C G T C A G T A C C G T A A T G C T G C A G T A C A T C G A C G T C T A G A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C G A G T A C T C G A G A T C C T A G A C G T A C T G A G C T G A C T

HEY2/MA0649.1/Jaspar

Match Rank:2
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:CATCCACACAMGTGTC
------GGCACGTGNC
 G A T C C G T A A C G T A T G C A T G C G T C A G T A C C G T A A T G C T G C A G T A C A T C G A C G T C T A G A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A T C G T C A G T A G C C T G A A T G C A C T G A G C T A C T G A G C T G A T C

Creb3l2/MA0608.1/Jaspar

Match Rank:3
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:CATCCACACAMGTGTC
-------ACACGTGGC
 G A T C C G T A A C G T A T G C A T G C G T C A G T A C C G T A A T G C T G C A G T A C A T C G A C G T C T A G A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A T G C C G T A A G T C A C T G A C G T A T C G C A T G G T A C

Npas2/MA0626.1/Jaspar

Match Rank:4
Score:0.56
Offset:6
Orientation:forward strand
Alignment:CATCCACACAMGTGTC
------GGCACGTGTC
 G A T C C G T A A C G T A T G C A T G C G T C A G T A C C G T A A T G C T G C A G T A C A T C G A C G T C T A G A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G A G T C C G T A G T A C C T A G A C G T C T A G A C G T G T A C

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:5
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:CATCCACACAMGTGTC
--------CACGTGDC
 G A T C C G T A A C G T A T G C A T G C G T C A G T A C C G T A A T G C T G C A G T A C A T C G A C G T C T A G A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C C T G A A G T C C T A G G C A T C T A G C G T A G A T C

PB0130.1_Gm397_2/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CATCCACACAMGTGTC
AGCGGCACACACGCAA-
 A C G T G A T C C G T A A C G T A T G C A T G C G T C A G T A C C G T A A T G C T G C A G T A C A T C G A C G T C T A G A C G T A G T C
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T

HEY1/MA0823.1/Jaspar

Match Rank:7
Score:0.56
Offset:6
Orientation:forward strand
Alignment:CATCCACACAMGTGTC
------GACACGTGCC
 G A T C C G T A A C G T A T G C A T G C G T C A G T A C C G T A A T G C T G C A G T A C A T C G A C G T C T A G A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T C G A A G T C T C G A A G T C A T C G A G C T C T A G A G T C T G A C

Hes2/MA0616.1/Jaspar

Match Rank:8
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:CATCCACACAMGTGTC----
-------GCACGTGTCNNNN
 G A T C C G T A A C G T A T G C A T G C G T C A G T A C C G T A A T G C T G C A G T A C A T C G A C G T C T A G A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C A C T G A G C T A C T G A G C T A T G C A C T G C G A T C G A T C G T A

RUNX1/MA0002.2/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CATCCACACAMGTGTC
AAACCACAGAN-----
 G A T C C G T A A C G T A T G C A T G C G T C A G T A C C G T A A T G C T G C A G T A C A T C G A C G T C T A G A C G T A G T C
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T A C G T

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:CATCCACACAMGTGTC
--------CACGTGBN
 G A T C C G T A A C G T A T G C A T G C G T C A G T A C C G T A A T G C T G C A G T A C A T C G A C G T C T A G A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C C T G A A G T C C T A G G C A T C A T G A C G T G C T A