Information for 2-RRTMAAGRGCTAT (Motif 2)

C T G A C T A G A C G T G T C A C G T A C G T A A C T G C T A G A T C G A G T C A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A A C T G A T G C A G T C A G T C A C G T A C G T A C G T G T C A A G T C A G C T
p-value:1e-10
log p-value:-2.375e+01
Information Content per bp:1.866
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif13.04%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.0 +/- 15.0bp
Average Position of motif in Background31.1 +/- 6.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:1
Score:0.57
Offset:1
Orientation:forward strand
Alignment:RRTMAAGRGCTAT
-BTBRAGTGSN--
 C T G A C T A G A C G T G T C A C G T A C G T A A C T G C T A G A T C G A G T C A C G T C G T A A C G T
A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-RRTMAAGRGCTAT
AGGTCAAGGTCA--
 A C G T C T G A C T A G A C G T G T C A C G T A C G T A A C T G C T A G A T C G A G T C A C G T C G T A A C G T
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-RRTMAAGRGCTAT
AGGTCAAGGTCA--
 A C G T C T G A C T A G A C G T G T C A C G T A C G T A A C T G C T A G A T C G A G T C A C G T C G T A A C G T
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:RRTMAAGRGCTAT
-NTCAAGGTCA--
 C T G A C T A G A C G T G T C A C G T A C G T A A C T G C T A G A T C G A G T C A C G T C G T A A C G T
A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:RRTMAAGRGCTAT
-NTCAAGTGGN--
 C T G A C T A G A C G T G T C A C G T A C G T A A C T G C T A G A T C G A G T C A C G T C G T A A C G T
A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:RRTMAAGRGCTAT
-CTYRAGTGSY--
 C T G A C T A G A C G T G T C A C G T A C G T A A C T G C T A G A T C G A G T C A C G T C G T A A C G T
A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:RRTMAAGRGCTAT---
-----AAGGATATNTN
 C T G A C T A G A C G T G T C A C G T A C G T A A C T G C T A G A T C G A G T C A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

NKX2-8/MA0673.1/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:RRTMAAGRGCTAT
-NTCAAGTGG---
 C T G A C T A G A C G T G T C A C G T A C G T A A C T G C T A G A T C G A G T C A C G T C G T A A C G T
A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T A C G T

POU6F2/MA0793.1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:RRTMAAGRGCTAT
-NTAATGAGCT--
 C T G A C T A G A C G T G T C A C G T A C G T A A C T G C T A G A T C G A G T C A C G T C G T A A C G T
A C G T C G T A C G A T T G C A C T G A C A G T C A T G G T C A C T A G A T G C G A C T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:RRTMAAGRGCTAT
--TTGAGTGSTT-
 C T G A C T A G A C G T G T C A C G T A C G T A A C T G C T A G A T C G A G T C A C G T C G T A A C G T
A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T