Information for 9-GCCATGGGAAHAA (Motif 18)

A C T G G A T C A G T C C G T A A C G T A C T G A C T G A C T G G C T A T C G A G T C A G T C A C G T A
Reverse Opposite:
C G A T A C G T C A G T A G C T C G A T A G T C A G T C T G A C C G T A A C G T A C T G C T A G G T A C
p-value:1e-5
log p-value:-1.242e+01
Information Content per bp:1.762
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif13.04%
Number of Background Sequences with motif44.5
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets36.7 +/- 10.5bp
Average Position of motif in Background47.5 +/- 46.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:1
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:GCCATGGGAAHAA
--CSTGGGAAAD-
 A C T G G A T C A G T C C G T A A C G T A C T G A C T G A C T G G C T A T C G A G T C A G T C A C G T A
A C G T A C G T A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GCCATGGGAAHAA
TTGCCATGGCAACN-
 A C G T A C G T A C T G G A T C A G T C C G T A A C G T A C T G A C T G A C T G G C T A T C G A G T C A G T C A C G T A
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GCCATGGGAAHAA
TTGCCATGGCAACC-
 A C G T A C G T A C T G G A T C A G T C C G T A A C G T A C T G A C T G A C T G G C T A T C G A G T C A G T C A C G T A
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCCATGGGAAHAA
GTTGCCATGGCAACM-
 A C G T A C G T A C G T A C T G G A T C A G T C C G T A A C G T A C T G A C T G A C T G G C T A T C G A G T C A G T C A C G T A
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C A C G T

RFX3/MA0798.1/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GCCATGGGAAHAA
CGTTGCCATGGCAACN-
 A C G T A C G T A C G T A C G T A C T G G A T C A G T C C G T A A C G T A C T G A C T G A C T G G C T A T C G A G T C A G T C A C G T A
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:6
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GCCATGGGAAHAA
CGGTTGCCATGGCAAC--
 A C G T A C G T A C G T A C G T A C G T A C T G G A T C A G T C C G T A A C G T A C T G A C T G A C T G G C T A T C G A G T C A G T C A C G T A
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C A C G T A C G T

RFX2/MA0600.2/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GCCATGGGAAHAA
CGTTGCCATGGCAACG-
 A C G T A C G T A C G T A C G T A C T G G A T C A G T C C G T A A C G T A C T G A C T G A C T G G C T A T C G A G T C A G T C A C G T A
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GCCATGGGAAHAA
GTTGCCATGGCAAC--
 A C G T A C G T A C G T A C T G G A T C A G T C C G T A A C G T A C T G A C T G A C T G G C T A T C G A G T C A G T C A C G T A
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T

RFX4/MA0799.1/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GCCATGGGAAHAA
CGTTGCCATGGCAACN-
 A C G T A C G T A C G T A C G T A C T G G A T C A G T C C G T A A C G T A C T G A C T G A C T G G C T A T C G A G T C A G T C A C G T A
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCCATGGGAAHAA
GTCATN-------
 A C T G G A T C A G T C C G T A A C G T A C T G A C T G A C T G G C T A T C G A G T C A G T C A C G T A
T C A G A C G T G A T C C G T A A G C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T