Information for 2-TMTWRWGTRWRGR (Motif 5)

A C G T G T A C A C G T C G T A C T A G C G A T A C T G A C G T C T A G C G A T C T G A A C T G C T G A
Reverse Opposite:
A G C T A G T C A G C T C G T A A G T C C G T A A G T C C G T A A G T C C G A T C G T A A C T G C G T A
p-value:1e-9
log p-value:-2.168e+01
Information Content per bp:1.778
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif25.4
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets65.5 +/- 27.5bp
Average Position of motif in Background39.9 +/- 38.9bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SA0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:TMTWRWGTRWRGR----------
---AANGTGAAGNANNGTNAAGG
 A C G T G T A C A C G T C G T A C T A G C G A T A C T G A C G T C T A G C G A T C T G A A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A T C G A C T A G A C T G A C G T C T A G T C G A T C G A C T A G C G T A C T G A T C A G C T A G C T A G C G A T C G T A C G T A C T G A T C A G C T A G

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TMTWRWGTRWRGR----
NNTNNTGTCTGGNNTNG
 A C G T G T A C A C G T C G T A C T A G C G A T A C T G A C G T C T A G C G A T C T G A A C T G C T G A A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TMTWRWGTRWRGR
--TTRAGTGSYK-
 A C G T G T A C A C G T C G T A C T A G C G A T A C T G A C G T C T A G C G A T C T G A A C T G C T G A
A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T

HLF/MA0043.2/Jaspar

Match Rank:4
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TMTWRWGTRWRGR
NGTTACGTAANN-
 A C G T G T A C A C G T C G T A C T A G C G A T A C T G A C G T C T A G C G A T C T G A A C T G C T G A
C A T G T C A G G C A T C A G T C T G A A G T C T C A G G A C T T G C A C G T A A G C T C T A G A C G T

NFIL3/MA0025.1/Jaspar

Match Rank:5
Score:0.52
Offset:2
Orientation:forward strand
Alignment:TMTWRWGTRWRGR
--TTATGTAACAT
 A C G T G T A C A C G T C G T A C T A G C G A T A C T G A C G T C T A G C G A T C T G A A C T G C T G A
A C G T A C G T C G A T A C G T C G T A A G C T C T A G A C G T C G T A C T G A A G T C T C A G G A C T

ZNF410/MA0752.1/Jaspar

Match Rank:6
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---TMTWRWGTRWRGR-
GANTATTATGGGATGGA
 A C G T A C G T A C G T A C G T G T A C A C G T C G T A C T A G C G A T A C T G A C G T C T A G C G A T C T G A A C T G C T G A A C G T
C A T G T C G A C A T G G A C T C T G A A G C T A C G T C T G A C A G T A T C G A C T G C A T G G T C A C G A T C T A G A C T G T G C A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:7
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:TMTWRWGTRWRGR
-CTYRAGTGSY--
 A C G T G T A C A C G T C G T A C T A G C G A T A C T G A C G T C T A G C G A T C T G A A C T G C T G A
A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:TMTWRWGTRWRGR
-NTCAAGTGG---
 A C G T G T A C A C G T C G T A C T A G C G A T A C T G A C G T C T A G C G A T C T G A A C T G C T G A
A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T A C G T

TEF/MA0843.1/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:TMTWRWGTRWRGR
NGTTACGTAATN-
 A C G T G T A C A C G T C G T A C T A G C G A T A C T G A C G T C T A G C G A T C T G A A C T G C T G A
A C G T T C A G G A C T C G A T T C G A A G T C C T A G A G C T G C T A C G T A A G C T T C G A A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:10
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----TMTWRWGTRWRGR
NNNCCATTGTGTNAN--
 A C G T A C G T A C G T A C G T A C G T G T A C A C G T C G T A C T A G C G A T A C T G A C G T C T A G C G A T C T G A A C T G C T G A
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G A C G T A C G T