Information for 3-AKRKMSMYRGGWTMAY (Motif 4)

C G T A A C G T C T A G A C T G G T A C A T C G G T A C A G C T C T A G A C T G A C T G C G A T A C G T G T C A C G T A A G C T
Reverse Opposite:
C T A G A C G T A C G T C G T A G C A T A G T C A G T C A G T C C T G A A C T G A T G C A C T G G T A C A G T C G T C A A C G T
p-value:1e-10
log p-value:-2.316e+01
Information Content per bp:1.748
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif15.00%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets38.6 +/- 19.6bp
Average Position of motif in Background64.4 +/- 2.8bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RHOXF1/MA0719.1/Jaspar

Match Rank:1
Score:0.62
Offset:8
Orientation:reverse strand
Alignment:AKRKMSMYRGGWTMAY
--------NGGATTAN
 C G T A A C G T C T A G A C T G G T A C A T C G G T A C A G C T C T A G A C T G A C T G C G A T A C G T G T C A C G T A A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:AKRKMSMYRGGWTMAY
-------NGGGATTA-
 C G T A A C G T C T A G A C T G G T A C A T C G G T A C A G C T C T A G A C T G A C T G C G A T A C G T G T C A C G T A A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:3
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:AKRKMSMYRGGWTMAY----
---NTNNNGGGGTCANGNNN
 C G T A A C G T C T A G A C T G G T A C A T C G G T A C A G C T C T A G A C T G A C T G C G A T A C G T G T C A C G T A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

Pitx1/MA0682.1/Jaspar

Match Rank:4
Score:0.53
Offset:8
Orientation:reverse strand
Alignment:AKRKMSMYRGGWTMAY
--------GGGATTAA
 C G T A A C G T C T A G A C T G G T A C A T C G G T A C A G C T C T A G A C T G A C T G C G A T A C G T G T C A C G T A A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:5
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AKRKMSMYRGGWTMAY--
NGAGGTCANNGAGTTCANNN
 A C G T A C G T C G T A A C G T C T A G A C T G G T A C A T C G G T A C A G C T C T A G A C T G A C T G C G A T A C G T G T C A C G T A A G C T A C G T A C G T
C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G

PITX3/MA0714.1/Jaspar

Match Rank:6
Score:0.53
Offset:8
Orientation:reverse strand
Alignment:AKRKMSMYRGGWTMAY-
--------GGGATTANN
 C G T A A C G T C T A G A C T G G T A C A T C G G T A C A G C T C T A G A C T G A C T G C G A T A C G T G T C A C G T A A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

RXRA::VDR/MA0074.1/Jaspar

Match Rank:7
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AKRKMSMYRGGWTMAY
GGGTCAACGAGTTCA-
 C G T A A C G T C T A G A C T G G T A C A T C G G T A C A G C T C T A G A C T G A C T G C G A T A C G T G T C A C G T A A G C T
C T A G A C T G A C T G A C G T A G T C C T G A G C A T A G T C C T A G C T A G A C T G A C G T C G A T A G T C T C G A A C G T

PB0081.1_Tcf1_1/Jaspar

Match Rank:8
Score:0.52
Offset:5
Orientation:forward strand
Alignment:AKRKMSMYRGGWTMAY------
-----ACTTAGTTAACTAAAAA
 C G T A A C G T C T A G A C T G G T A C A T C G G T A C A G C T C T A G A C T G A C T G C G A T A C G T G T C A C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A G A T C A G C T G A C T T C G A C T A G G A C T C G A T G C T A C G T A A G T C G A C T C T G A T C G A C T G A G T C A C T G A

PB0030.1_Hnf4a_1/Jaspar

Match Rank:9
Score:0.52
Offset:3
Orientation:forward strand
Alignment:AKRKMSMYRGGWTMAY----
---CTCCAGGGGTCAATTGA
 C G T A A C G T C T A G A C T G G T A C A T C G G T A C A G C T C T A G A C T G A C T G C G A T A C G T G T C A C G T A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

OTX2/MA0712.1/Jaspar

Match Rank:10
Score:0.52
Offset:8
Orientation:reverse strand
Alignment:AKRKMSMYRGGWTMAY
--------NGGATTAA
 C G T A A C G T C T A G A C T G G T A C A T C G G T A C A G C T C T A G A C T G A C T G C G A T A C G T G T C A C G T A A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A